Curator Dashboard

Software R package for mapping country data.Enables mapping of country level and gridded user datasets by facilitating joining to modern world maps and offering visualisation options. Country borders are derived from Natural Earth data v 1.4.0.

• Resource
• RRID
• 3 years ago - by Anonymous

Software R package as set of standards that specify common storage and access model of geographic features made of mostly two dimensional geometries used by geographic information systems. Standardized way to encode spatial vector data. Formalized by Open Geospatial Consortium and International Organization for Standardization.

• Resource
• RRID
• 3 years ago - by Anonymous

Core to capture mass spectral data obtained through time-of-flight measurements that can be used for 3D nanoscale compositional analysis to identify light mass and heavy mass species with equivalent sensitivity.

• Resource
• RRID
• 3 years ago - submitted by Anne Steputis

Software command line Python package for computation of chokepoint reactions in genome scale metabolic models. Used to compute chokepoints by taking into account both topology and dynamic information of network. Can compute and remove dead-end metabolites, find essential reactions and update flux bounds of reactions according to results of Flux Variability Analysis.

• Resource
• RRID
• 3 years ago - submitted by Alexandru Oarga

Web application that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Enables searching for potential off-target sites in any sequenced genome rapidly without limiting PAM sequence or number of mismatched bases.

• Resource
• RRID
• 3 years ago - submitted by Francois Seys

Web-based design tool for CRISPR base editing. Guide RNA designer for CRISPR base editing. Provides all possible base editor target sequences in given input DNA sequence with useful information including potential off target sites.

• Resource
• RRID
• 3 years ago - submitted by Francois Seys

Provides medical care, in vivo research support, and disease surveillance to laboratory animals at Stanford University . Our board certified and board eligible veterinarians offer consultation in appropriate animal modeling, animal care techniques, experimental methodology, anesthetic techniques, surgical techniques, pain management, humane euthanasia techniques, and animal use (APLAC) protocol consultation. AALAS certified veterinary technicians are available to provide technical support including dosing, biosampling, conducting anesthesia and post-operative care, for example.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Procures and provides needed tissue specimens to Stanford Cancer Institute investigators to support cancer related research. Services include collecting and banking freshly frozen tumor and normal tissue from surgical material and autopsy specimens;Providing fresh tumor tissue for viable cell studies;Processing and banking blood from cancer patients;Maintaining tissue database with links to clinicopathological data;Providing histological staining and pathological review;Coordinating patient consent and assuring regulatory compliance.Provides portal to virtual bank which links inventories of specialized satellite repositories, including collections of hematological and neurosurgical specimens.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Collecting and banking freshly frozen tumor and normal tissue from surgical material and autopsy specimens.Provides fresh tumor tissue for viable cell studies,processes and banks blood from cancer patients,maintains tissue database with links to clinicopathological data,providing histological staining and pathological review,coordinating patient consent and assuring regulatory compliance.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core manager provides oversight and training on user-friendly instrumentation so that each investigator is able to perform sorts and analysis on their own.Manager also provides technical help with more complex sorts, ensures that instruments are maintained properly, and will perform troubleshooting as necessary. This novel design will allow for critical stem cell sorts to be done efficiently and economically.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Offers clinical laboratory services including hematology, cytology, serum chemistry, electrolyte analysis, coagulation profiles, fluid analysis, serology/immunology, parasitology, and microbiology; Specializes in diagnostic and research needs of laboratory animals. Committed to improving diagnostics, developing additional reference ranges for various clinical pathology parameters in laboratory animals, and supporting health surveillance and disease management.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Academic service center specializing in planning, installation and maintenance of research computer systems.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Services include genome editing of mice, rats and cell lines, mouse line cryopreservation and re-derivation, ES cell targeting, PDX models, drug screening.Crispr Mediated KO/KI and Conditional KO Mice,KI mouse by mouse ES cell genome editing,Integrase Mediated Transgenesis,Conventional Transgenic Mouse,Mouse Line Services,Cell Line Services. Tumor Model Services include In vivo tumor models,In vivo pharmacology,In vitro and biochemical assays,Translational imaging services.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides access to ultrasound, MRI, CT, and PET, instruments developed specifically for small animal work and photoacoustic imaging. All instruments are designed to image living subjects and allow for repeated imaging. The flexibility and rapid analyses of such animal models greatly accelerate the development of molecular imaging strategies.Facility houses surgical procedure room, histology slide scanner that converts glass slides into digital slides using both brightfield and fluorescence, and advanced image analysis workstations.Instruments include MicroPET Imaging Systems,Optical Imaging Systems,UltraSound Imaging System,Photoacoustic Imaging System,X-Ray Computed Tomography Imaging System,Magnetic Resonance Imaging.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides access and training to instruments including optical microscopes with three confocal systems, two wide-field systems, light sheet system, laser-microdissection system, cell-culture microscope, stereomicroscope, optical tweezer system, and Atomic Force Microscope. Maintains cell culture equipment such as biosafety cabinet, incubators, refrigerator, and microfuges and lab support areas for cell culture and sample preparation.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software pipeline developed in collaboration with BRAIN Initiative Cell Census Network and BRAIN Initiative Cell Atlas Network. Supports processing of spatial transcriptomic data generated with Slide-seq commercialized as Curio Seeker assay.

• Resource
• RRID
• 3 years ago - submitted by Kaylee Mathews

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 5,2025. Core provided services include paraffin embedding, paraffin and cryo sectioning, histological stainings, immunostainings; Image acquisition includes brightfield, fluorescence and polarized light whole slide imaging,2D fluorescence microscopy, 3D fluorescence microscopy; Image analysis includes 2D images : ImageJ/Fiji support – ZEN Analysis (Zeiss),2D whole slide scans: Author (Visiopharm), Halo (Indicalab), QuPath, 3D images: Arivis (Zeiss), Imaris (Bitplane).

• Resource
• RRID
• 3 years ago - by Anonymous

Proteomics Unit is joint effort of Universitat Pompeu Fabra and Center of Genomic Regulation. Provides proteomics services by offering state-of-the-art methods, advise and expertise to support basic and translational researchers; developing new methods and techniques that keep the unit up to date and at the forefront of the proteomics field; training community and actively disseminating proteomics science and methods.Part of Spanish National Infrastructure for Omics Technologies and European Proteomics Infrastructure Consortium, and it coordinates European innovative and interdisciplinary Research and Training network. The Proteomics Unit is also part of Spanish National Health System.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides technology platform to perform protein production and automated processes in context of biomolecular and biochemical screening assays.Through staff assisted screening, users have access to equipment including liquid handlers, plate readers and small molecule libraries.Unit is aimed at supporting the researchers of the CRG institute by purchasing, seeking and maintaining valuable stocks of clones and strains.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides latests technologies for stem cell biology, stem cell differentiation, organoid formation and induced pluripotent stem cells.Tissue Engineering platform works in collaboration with Biomolecular Screening and Protein Technologies Unit to provide CRISPR/Cas9 genome editing technology service.Unit also includes Histology In-house Service (only for PRBB residents) provides histopathological analysis required for analysing tissues from research performed in in vivo models. Histology In-house Service performs and optimizes histological processing and analysis of tissue, from experimental animal models and human origin.Provides mentoring and training in common histological techniques.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth