Curator Dashboard

Software application as medical image viewer.Able to load series of special images stored in DICOM format for review. Able to query and fetch DICOM images from archive nodes (also called PACS) over the network. Designed to run under Linux.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Facility offers custom sequencing services from DNA/RNA extractions to sequencing using Illumina and Oxford Nanopore platforms. Projects examples include bulk RNAseq, 3\'RNASeq, Single Cell transcriptomics (10X Genomics), Genome sequencing, and amplicon sequencing (ie 16SRNA, genotyping). Services include experimental design and bioinformatics data analysis.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for simulation of antigen experienced adaptive immune receptor repertoire datasets for benchmarking of machine learning methods.

• Resource
• RRID
• 3 years ago - submitted by Chakravarthi Kanduri

Leica ST5010 Autostainer XL provides reproducible, consistent high quality staining, and increased workload throughput compared to manual staining.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool for simulation of antigen experienced adaptive immune receptor repertoire datasets for benchmarking of machine learning methods.

• Resource
• RRID
• 3 years ago - submitted by Chakravarthi Kanduri

A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files

• Resource
• RRID
• 3 years ago - submitted by Melanie Weigert

• SciCrunch
• 3 years ago - by Anonymous

Database of human regulatory elements like enhancers and promoters, and their inferred target genes which is embedded in GeneCards, human gene compendium. Associations between regulatory elements and target genes were based on multiple sources of linking molecular data, along with distance.

• Resource
• RRID
• 3 years ago - submitted by Melanie Weigert

Core provides instrumentation for light and fluorescence based microscopy, including epifluorescence, confocal, and super-resolution imaging.Provides access to and training on basic and advanced light microscopy techniques. Expertise and advice is available for the design of experiments involving these techniques.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides expert bioinformatics, analytical, and data science consulting and analysis solutions. Offers support for the management and analysis of large scale biological datasets.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Sliding microtome produces sections for human paraffin sectioning applications.Microtome has enclosed micrometer feeding system with ergonomically positioned object head close to the user. Running sledge can be locked in 11 positions by using sledge brake.

• Resource
• RRID
• 3 years ago - by Anonymous

Code used for data processing, variant impact predictor modelling and result analysis. Used to improve prediction results to predict the impact of amino acid variants. Extended linear regression-based predictor to explore whether incorporating data from alanine scanning, widely-used low-throughput mutagenesis method, would improve prediction results.

• Resource
• RRID
• 3 years ago - by Anonymous

Software Python cross platform framework for creating, managing, and sharing workflows. Workflow consists of number of connected workflow steps. Framework is plugin-based application where the plugins are workflow steps. Can be used for visualising and mapping anatomical structures.

• Resource
• RRID
• 3 years ago - submitted by Hugh Sorby

Comprehensive DNA methylation database. Provides genome wide mapping of methylation sites to target genes through integrating a large number of DNA methylation and gene expression profiles in human diseases, and to annotate methylation sites to abundant regulatory elements and TFs.

• Resource
• RRID
• 3 years ago - by Anonymous

Software for comprehensive PCR Primer design. Search algorithm finds optimal PCR, multiplex and SNP genotyping primers with the most accurate melting temperature.Primers are screened for secondary structures, dimers, hairpins, homologies and physical properties before reporting the best ones for your sequence, in ranked order. Load the gene of interest from NCBI, select search range, and let Primer Premier pick the best possible primers for you.

• Resource
• RRID
• 3 years ago - by Anonymous

Software toolkit for analyzing linked-read sequencing data. Used to process human and metagenomic linked read sequencing data from different linked read sequencing technologies, including 10x Genomics, single tube long fragment read and transposase enzyme linked long read sequencing. LRTK provides functions to perform read cloud assembly, barcode aware read alignment, reconstruction of long DNA fragments, taxonomic classification and quantification, and genomic variant calling and phasing. LRTK also has the ability to perform automatic analysis from raw sequencing data to downstream analysis and support analysis of multiple samples in parallel. Can produce publication ready visualizations and generates reproducible reports, summarizing key parameters at multiple checkpoints such as library preparation.

• Resource
• RRID
• 3 years ago - by Anonymous

Portal provides HPV-associated cancer statistics. Population based data from cancer tissue to estimate percentage of these cancers that are caused by HPV. Portal provides number of HPV-Attributable Cancer Cases per Year.

• Resource
• RRID
• 3 years ago - by Anonymous

Regularly collects nationally representative data about American public’s knowledge of, attitudes toward, and use of cancer and health related information. HINTS data are used to monitor changes in fields of health communication and health information technology and to create more effective health communication strategies across different populations. Weighted, nationally representative probability based survey of civilian, non-institutionalized adults administered by National Cancer Institute on knowledge of and attitudes toward cancer relevant information.

• Resource
• RRID
• 3 years ago - by Anonymous

Bibliographic database for sports and sports medicine research. Includes records from leading sports medicine journals. Includes rigorous curation and indexing of open access journals. Once validated and certified for inclusion, these journals are treated with subject indexing and full text linking.

• Resource
• RRID
• 3 years ago - by Anonymous

Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed.

• Resource
• RRID
• 3 years ago - submitted by Kevin Chavez Lopez