Curator Dashboard

Software package to use BioMAJ providing biomaj-cli.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package for analyzing, processing and visualizing multi-dimensional microscopy images. Multipurpose postprocessing tool for bioimaging. Can be used for simple visualization of multi-channel temporal image stacks to complex 3D rendering of multiple channels at once.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software statistical tool for identifying genetic associations. Used for genome wide association studies in large cohorts.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source framework for bioinformatics written in Objective-C. Provides Cocoa and GNUstep programmers with full suite of APIs for handling and manipulating biological sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application as simultaneous Bayesian inference of alignment and phylogeny. Used to estimate multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences. to explore the joint space of alignment and phylogeny given molecular sequence data. BAli-Phy version 3 is model based co-estimation of alignment and phylogeny. Version 3 is substantially faster for large trees, and implements covarion models, additional codon models and other new models. Implements ancestral state reconstruction, allows prior selection for all model parameters, and can also analyze multiple genes simultaneously.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for constructing compacted de Bruijn graph from sequencing data.Parallel algorithm that distributes the input based on minimizer hashing technique, allowing for good balance of memory usage throughout its execution.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Bibliographic and reference management software. Allows to search, edit, and sort bibliographic records.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software bibliography processing backend for LaTeX biblatex package. Supports unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. BibTeX replacement for users of BibLaTeX.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for building minimal perfect hash function. Designed to handle large scale datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for large scale co-phylogenetic analyses on several thousands of taxa. Faster than DistPCoA and numerically stable on large datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package contains lightweight C implementation of name collating BAM file input and BAM file output.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tools for common BAM file manipulations.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for large scale co-phylogenetic analyses on several thousands of taxa. Allows for rapid and much more thorough computation and analyses of large co-phylogenetic datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web analytics tool for detection of variants from assembly. Used to detect and analyze structural variants from genome assembly by comparing it to reference genome.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web application for visualizing pathogen evolution.Interactive web app for visualizing phylogenomic data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Sotware tool designed to run Process S simulations on Slow Wave Activity profiles from human EEG recordings.Produces set of sleep homeostat parameters which can be used to describe and differentiate individual sleepers, such as short vs long sleepers, early vs late, etc.Sleep research experiment manager, with facility for reading, displaying, and manual and semi-automatic scoring EEG recordings in edf format; conventional PSD and EEG Microcontinuity profiles; artifact detection; Independent Component Analysis; basic sleep analysis NREM-REM cycle detection.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to track evolution from sequence and serological data. Provides collection of commands which are designed to be composable into larger processing pipelines.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software to get assembly statistics from FASTA and FASTQ files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for specific, sensitive, and speedy trimming of NGS reads.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to prevent code duplication. Support code for NGS copy number algorithms. Generates count of coverage of each allele ACGT at that location given any filter settings.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth