Curator Dashboard

Software tool for filtering long reads by quality.Can take set of long reads and produce smaller, better subset. Uses both read length and read identity when choosing which reads pass the filter.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package for Bayesian tree inference. Used for large-scale analyses on computer clusters.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Softwaare alignment free comparison tool for phylogenetic analysis and text comparison. Can be applied to nucleotide sequences, complete genomes, proteomes and for text comparison.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source C++ library and application for contact network epidemiology. Application programming interface that models the spread of infectious disease in population and generates and manipulates networks of nodes and edges.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python library aimed at making the simulation of metapopulation models. Software tool to study disease spread in complex networks.Used to help designing and simulating network-epidemic models with any kind of node behavior.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool provides graphical interface for tethered shooting, aka taking photographs with digital camera completely controlled from the computer.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web based graphical user interface to the EMBOSS suite of bioinformatics tools.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web browser enabled tool with versatile command line interface to perform exploratory investigations of 3D visualizations of microbial community data, such as principal coordinates plots. EMPeror includes set of controllers to modify features as function of metadata. Web interactive next generation tool for analysis, visualization and understanding of high throughput microbial ecology datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only a small fraction of complex traits, which allows us to avoid repetitive variance component estimation procedure, resulting in a significant amount of increase in computational time of association mapping using mixed model.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as general purpose Gibbs sampler for finding motifs in set of DNA or protein sequences.Takes as input a set containing sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif. Used to find patterns such as ribosome binding sites (RBSs) and exon splicing enhancers (ESEs).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software programming library for C/C++ to read/write EDF+/BDF+ files.It also reads old-type EDF/BDF files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software de novo adapter prediction algorithm for small RNA sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package provides DICOM medical image files manipulation and conversion tools. Command line utilities for creating, modifying, dumping and validating DICOM files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python scripts to convert CTD files into other formats such as Galaxy, CWL.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software extensible open source radiation therapy research platform based on the DICOM standard. It also functions as a cross-platform DICOM RT viewer.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software as Bax file decoder and data compressor.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to simulate process of transmitting X-rays through phantom objects. Reconstructs original phantom image from projections. Has wide array of image analysis and image processing functions.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Java program for analyzing and visualizing rooted phylogenetic trees and networks.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software to support biomedical image computing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for demultiplexing barcoded Oxford Nanopore sequencing reads.Signal level demultiplexer for Oxford Nanopore reads.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth