Curator Dashboard

Core facility offers services unique in Canada for study of carbohydrate and energy metabolism in rodents such as routine tolerance tests of glucose, lipids, pyruvate, insulin and metabolic cages.Provides expertise in performing hyperglycemic clamps as well as Hyperinsulinemic-euglycemic clamps. Offers services for research projects carried out at the cellular or tissue level and on animals,complete metabolic phenotyping of genetically modified rodents, evaluation of effect of pharmacological or molecular interventions on carbohydrate and/or energy metabolism in healthy rodent models or in obese or diabetic models.All surgical procedures, metabolic tests, dosing and data analyses are carried out by our staff.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package to create, modify, analyze, and visualize network graph diagrams. Graph and network visualization using tabular data in R.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool for rapid haploid variant calling and core genome alignment.

• Resource
• RRID
• 3 years ago - by Anonymous

Visium Spatial Gene Expression is next-generation molecular profiling solution for classifying tissue based on total mRNA. Allows to map whole transcriptome with morphological context in FFPE or fresh frozen tissues. Used to perform spatial transcriptomics, which combines histological information with whole transcriptome gene expression profiles to provide spatially resolved gene expression. System for classifying tissue based on total mRNA. Includes two software to analyze data. Space Ranger analysis software that automatically overlays spatial gene expression information on tissue image and identifies clusters of spots with similar transcription profiles. Loupe Browser visualization software to interactively explore results.

• Resource
• RRID
• 3 years ago - submitted by Anita Bandrowski

Software R package for query NCBI Entrez and retrieve PubMed records in XML or text format. Used to process PubMed records by extracting and aggregating data from selected fields. Large number of records can be downloaded via this simple-to-use interface to NCBI PubMed API. Used to search and retrieve scientific publication records from PubMed.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool that performs SET Operations including Set Intersections, Set Unions and Set Differences over lists of words, numbers etc with formatted results . Used for comparing differences between two lists.

• Resource
• RRID
• 3 years ago - by Anonymous

Software R package for randomization of clinical trials. Provides sound scientific evidence for choice of randomization procedure, on the basis of well founded criteria. Includes functions for generating randomization sequences from various randomization procedures as well as various issues for assessment of randomization procedures.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool written in Bash to ease different standard preprocessing steps of short high throughput sequencing reads. Runs on UNIX, Linux and most OS X operating systems.

• Resource
• RRID
• 3 years ago - by Anonymous

Software R package containing several basic utility functions including moving, rolling, running,window statistic functions, read, write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder,decoder, round-off-error-free sum and cumsum.

• Resource
• RRID
• 3 years ago - by Anonymous

Republic of Korea e-Government platform for major domestic, international and North Korean statistics. Web service provides official statistics produced by statistical agencies covering more than 500 subject matters as well as the latest data on international finance and economy from international organizations i.e. IMF, World Bank, OECD.

• Resource
• RRID
• 3 years ago - submitted by Jihye Choi

Software package as heterogenous compute solution for Oxford Nanopore Technologies adaptive sampling also known as selective sequencing and Read Until. Read Until allows genomic reads to be analyzed in real-time and abandoned halfway, if not belonging to genomic region of interest. HARU takes advantage of heterogenous edge compute platforms and provides hardware acceleration using reconfigurable hardware on Multiprocessor system on chip.

• Resource
• RRID
• 3 years ago - submitted by Hasindu Gamaarachchi

Core provides pathologic services ranging from animal model troubleshooting, and tissue fixation to stain slide prep and immunohistochemistry. Offers expertise in slide interpretations and quantitative histopathology in anatomic and clinical pathology. Offers molecular pathology services via Nanostring nCounter equipment.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core of Comprehensive Transplant Center provides translational mechanistic studies in human solid organ and cellular transplantations. Provides assistance with human immune monitoring needs for translational and clinical transplantation research projects.Offers immune monitoring services for translational mechanistic studies.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web tool for retrieving available lexicon. It comes in app format, which can be downloaded from the tool's website, and in web format, which can be completed online.

• Resource
• RRID
• 3 years ago - by Anonymous

Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation.

• Resource
• RRID
• 3 years ago - by Anonymous

Software R package for computing Polygenic Risk Scores from dosages.

• Resource
• RRID
• 3 years ago - by Anonymous

Collaborative research effort among physicians, researchers, and patients at the University of Michigan with goal of combining patient electronic health record data with corresponding genetic data to gain novel biomedical insights. Biobank linking genotypes and electronic clinical records in Michigan Medicine patients. MGI participants agree to provide study team with access to EHR data for clinical information and biospecimen including blood or saliva.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool as algorithm for finding maximal independent set of nodes in arbitrary undirected graph along with efficient implementation in C++. Used to discover unlinked markers, and unrelated individuals in populations.

• Resource
• RRID
• 3 years ago - by Anonymous

Web based service for imputation that facilitates access to new reference panels and improves user experience and productivity. Server implements whole genotype imputation workflow using MapReduce programming model for efficient parallelization of computationally intensive tasks. Genotype imputation service using Minimac4.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool as collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. Single cell analysis pipelines developed by Singleron Biotechnologies.

• Resource
• RRID
• 3 years ago - by Anonymous