Curator Dashboard

Software tool for redesign and expansion of prediction on kinase specific phosphorylation sites. Machine learning based kinase specific phosphorylation site prediction tool.

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• RRID
• 3 years ago - by Anonymous

Software tool for speeding up estimation of phylogenetic trees for large alignments through parallelization and vectorization strategies.

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• SciCrunch
• 3 years ago - submitted by César Pomar

Software package as collection of WDL workflows to build linkage maps from sequencing reads. WDL workflows to build genetic maps from sequencing reads.

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• RRID
• 3 years ago - submitted by Cristiane Taniguti

Software parallel Big Data toolkit to process FASTA and FASTQ files at scale. Used to manipulate FASTA/Q files at scale with speed and scalability at its core.

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• SciCrunch
• 3 years ago - submitted by César Pomar

Web tool for predicting DNA methylation sites. Identifies methylation sites for three different types of DNA methylation, namely N6-adenine, N4-cytosine, and 5-hydroxymethylcytosine. MuLan-Methyl-Multiple transformer based language models for accurate DNA methylation prediction.

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• RRID
• 3 years ago - submitted by Anupam Gautam

Provides access to in vivo imaging technologies including molecular imaging, optical imaging, quantitative physiologic and anatomic imaging, and whole body PET/CT scanning in humans and animals. Provides targeted imaging probes and tracers as well as expertise in planning, executing and analyzing in vivo imaging studies. Supports imaging studies in small animals, large animals and humans.This resource is located in three adjacent buildings in the Health Sciences district of the Davis campus:Center for Molecular and Genomic Imaging (CMGI), Genome and Biomedical Sciences Facility (small-animal imaging);Nuclear Magnetic Resonance (NMR) Facility, Tupper Hall (small-animal MRI);Center for Imaging Sciences (CIS), Veterinary School (large-animal imaging).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides services to support the development and implementation of clinical trials at UC Davis Comprehensive Cancer Center. Oversees high quality collection, processing, and analysis of clinical specimens,typically but not exclusively blood specimens, for pharmacokinetic and pharmacodynamics studies. Conducts preclinical modeling of novel anti cancer agents to test hypotheses and develop scientific rationale required for translation of laboratory concepts into clinical trials, including assessment of DM/PK/PD properties.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Clinical Laboratory Improvement Amendments certified laboratory established to provide scientific support to investigators conducting clinical studies in humans, preclinical studies in animals and/or studies in veterinary medicine. Conducts immunology based assays needed to monitor patients in clinical immunotherapy trials. Offers molecular and cellular assays for investigators in different fields, including custom assays designes.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides expertise and comprehensive services to accomplish virtually every application of next generation sequencing based genomics research, including gene expression profiling, mutation/variant analyses, copy number analysis, epigenomics, metagenomics, single cell sequencing and spatial transcriptomics services. GSR also specializes in development of custom protocols and extensive data analysis and integrative bioinformatics support. The shared resource provides wide range of additional services for translational and clinical genomics research.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides expertise in design, analysis and reporting of cancer related studies, including basic, translational, clinical and population based research. BSR affiliated faculty and staff work with investigators from the earliest stages of study planning. The shared resource is especially committed to mentoring early career cancer researchers.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides high throughput screening platform to discover unique chemical probes against biological targets using various one bead one compound and one bead two compound combinatorial libraries.Interacts closely with resource users on optimization of the lead compounds via focused libraries and standard medicinal chemistry techniques. Provides custom synthesis of telodendrimer based micellar nanoparticle platform for efficient drug delivery.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides specimens with annotated data for clinical and basic science research purposes.Biorepository functions as centralized tissue bank to provide researchers access to cancer- and non-cancer-related specimens including fresh or frozen tissue, paraffin blocks,sections and fluids, procured and stored using international standards of best practices and protocols compliant with Office for Human Research Protection. Specimens can be obtained prospectively as part of clinical trials or accessed through UC Davis Health Clinical Laboratories, where over 5.5 million blood specimens are processed annually.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Department of Chemistry houses comprehensive array of research facilities to support diversity of scientific work. Staff members expertly maintain each facility and are available to help users set up experiments or interpret results. Our resources facilitate scientific progress from giving chemists deeper understanding of their data to providing essential characterization of compounds for publication.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Cytiva is the new name of the former GE Healthcare Life Sciences biopharma business following its acquisition by Danaher Corporation, according to an April 1, 2020 announcement. Provider of life sciences brands such as ÄKTA, Amersham, HyClone, MabSelect and Whatman.

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• RRID
• 3 years ago - by Anonymous

Life science company that develops and manufacture imaging and analyzing systems for fluorescence, chemiluminescence and bioluminescence applications.

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• RRID
• 3 years ago - by Anonymous

Life Science company providing human cell culture and cell biology products.

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• RRID
• 3 years ago - by Anonymous

Interactive web tool to visualize single cell data using force directed graph layouts. Kinetic interface for visualizing high dimensional single cell expression data. Collection of pre-processing scripts and web browser based tool for visualizing and interacting with high dimensional data.

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• RRID
• 3 years ago - by Anonymous

ImageJ plugin for quantitative evaluation and automated scoring of immunohistochemistry images of human tissue samples. IHC profiler has been developed as standard automated scoring tool.

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• RRID
• 3 years ago - by Anonymous

Core provides range of mass spectrometry based proteomics services to assist with protein characterization, identification and quantification, and apply these technologies to solve relevant biological problems. Equipment including Thermo Scientific Orbitrap Fusion Tribrid mass spectrometer, Thermo Scientific Q Exactive hybrid quadrupole-Orbitrap benchtopmass spectrometer, Agilent Technologies 1100 HPLC. Services include Mini SDS-PAGE,Gel Coomassie staining,Protein/Peptide Assay,Protein Precipitation,Solution or in-gel sample digestion and high resolution LC-MS/MS using 1-4Hr gradients,High resolution LC-MS/MS using 1-4Hr gradients (self-digested samples),High resolution MS and MS/MS via direct infusion,Protein digest clean up,TMT quantification,SILAC quantification,Label free quantification,HPLC peptide separation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

System includes 3D Printed Syringe Pump Rack composed by 5 Syringe Pumps to have 2 continuous flow systems and one remaining pump. Syringe Pump is used to gradually administer small amounts of fluid to patient or for use in chemical and biomedical research. Main features include Open hardware/software, Extremely compact size ( 7cm movement range ), High precision lead screw and nut, Simple to use (command line interface), Simple to replicate, Minimal clean Design.

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• RRID
• 3 years ago - submitted by Samantha White