Curator Dashboard

R package with tools that use probabilistic inference of ChIP-Seq. It follows an empirical Bayes mixture model approach.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A Matlab / Octave-based mesh generation toolbox designed for easy creation of high quality surface and tetrahedral meshes from 3D volumetric images. It contains a rich set of mesh processing scripts/programs, functioning independently or interfacing with external free meshing utilities. Iso2mesh toolbox can operate directly on 3D binary, segmented or gray-scale images, such as those from MRI or CT scans, making it particularly suitable for multi-modality medical imaging data analysis or multi-physics modeling.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Web based graphical user interface to the EMBOSS suite of bioinformatics tools.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A software package for numerical computation providing a powerful computing environment for engineering and scientific applications. It includes hundreds of mathematical functions and has a high level programming language allowing access to advanced data structures, 2D and 3D graphical functions.

• Resource
• SciCrunch
• 11 years ago - submitted by Jamie Li

Software library for handling sequence graphs in Python.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A suite of software tools for analyzing and manipulating next-generation sequencing datasets, such as FASTQ, BED and BAM format files. These tools provide a stable and modular platform for data management and analysis.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

An ontology distributed in OWL format which contains comprehensive terms describing ion channel electrophysiology. Terms from related ontologies, such as Cell Physiology Ontology (CPO), Cardiac Electrophysiology Ontology (CEPO), and Unit Ontology, were integrated into ICEPO.

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• SciCrunch
• 11 years ago - submitted by Anita Bandrowski

Software tool to report information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package providing functions and classes for DNA copy number profiling of array-CGH data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

The goal of the Integrated Islet Distribution Program (IIDP) is to work with the leading islet isolation centers in the U.S. to distribute high quality human islets to the diabetes research community, in order to advance scientific discoveries and translational medicine.

• Resource
• dkNET
• 11 years ago - submitted by Ko-Wei Lin

Software memory efficient bioinformatics library written in D programming language whose aim is to provide platform for developing high performance computational biology applications using the D programming language through automatic parallelization of tasks where possible and by avoiding unnecessary memory allocations.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package for Illumina 450 methylation array normalization and metrics including 15 flavors of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

An international collaborative effort to develop and enrich new and existing reference ontologies for plants, improve ontology use and cross-references, and to develop data annotation standards. Users can search for ontology terms and bioentities and submit the ontology-related term requests by visiting the following GitHub request trackers.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Software C/C++ (and Python) library for sequence alignment using edit (Levenshtein) distance.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software that searches for novel/known fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software C++ thread pool library.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package that generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). Reports contain both general and platform-specific sections. Both one and two color array platforms are supported.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A European organization primarily concerned with the study of renal disorders. The organization is working towards discovering the genes responsible for renal development, renal disease and the related proteins and their actions. EuReGene consists of a consortium of scientists, clinicians, and SME partners that study functional genomics and their application in kidney research.

• Organization
• SciCrunch
• 11 years ago - submitted by Gabrielle Pine