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Software for gene prediction in eukaryotic genomic sequences. Serves as a basis for further steps in the analysis of sequenced and assembled eukaryotic genomes.

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• SciCrunch
• 17 years ago - by Anonymous

Atta is an information system that supports the core information process at the National Biodiversity Institute in Costa Rica (INBio). As such, Atta facilitates the processes of capturing, managing, generating and disseminating information on Costa Rican biodiversity. This system maintains a relational database with over two million records, each one corresponding to a single specimen. Through a unique bar code physically attached to each specimen, users of Atta have efficient and systematic access to the associated digital information. This information includes, but is not restricted to, the where, when, how, and who collected the specimen. When the taxonomic identification process is concluded, this information is supplemented with a complete taxonomic description of the specimen Atta is INBio''s second version of a comprehensive, efficient, scalable, multi-taxa information system that now exploits modern technologies such as multimedia, object-oriented development, GIS, and Internet. Sponsors: This resource is supported by Costa Rican Biodiversity. Keywors: Biodiversity, Database, Speciman, Biology, Technology, Taxonomy,, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 17 years ago - by Anonymous

Service to identify a wide range and large number of microbial species (~ 2000) by simple phenotypic testing for dangerous pathogens and for filamentous fungi. The company produces and sells a variety of test kits and instruments. Keywords: Microbial, Microarray, Phenotype, Bacterial, Bacterium, Cell, Technology, Assay, Phenotypic, Testing, PAthogen, Bio terrorism, Fungus, Drug, Discovery, Development, Cellular, Research, Genomics, Toxicogenomics,

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• SciCrunch
• 17 years ago - by Anonymous

A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software)

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• SciCrunch
• 14 years ago - by Anonymous

For the purposes of the Aquatic Code, spring viraemia of carp (SVC) means infection with the viral species SVC virus (SVCV) tentatively placed in the genus Vesiculovirus of the family Rhabdoviridae.<BR/> Methods for surveillance and diagnosis are provided in the Aquatic Manual.<BR/> The recommendations in this Chapter apply to: common carp (Cyprinus carpio carpio) and koi carp (Cyprinus carpio koi), crucian carp (Carassius carassius), sheatfish (also known as European catfish or wels) (Silurus glanis), silver carp (Hypophthalmichthys molitrix), bighead carp (Aristichthys nobilis), grass carp (white amur) (Ctenopharyngodon idellus), goldfish (Carassius auratus), orfe (Leuciscus idus), and tench (Tinca tinca). These recommendations also apply to any other susceptible species referred to in the Aquatic Manual when traded internationally.<BR/> 1) Periodicals<BR/> *Scientific and Technical Review (available on the Online Bookshop and Website);<BR/> *Bulletin (available on the Online Bookshop and Website);<BR/> *Disease Information (available on the WAHID interface);<BR/> *World Animal Health (available on the Online Bookshop and on the WAHID interface);<BR/> Health standards<BR/> *Terrestrial Animal Health Code (available on the Online Bookshop and Website);<BR/> *Aquatic Animal Health Code (available on the Online Bookshop and Website);<BR/> *OIE Quality Standard and Guidelines for Veterinary Laboratories: Infectious Diseases (available on the Online Bookshop);<BR/> *Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (available on the Online Bookshop and Website);<BR/> *Manual of Diagnostic Tests for Aquatic Animals (available on the Online Bookshop in English only (2009 version) and also on the Website).<BR/>

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• SciCrunch
• 17 years ago - by Anonymous

It presents beautifully. Even if youve never used Keynote before, youll find creating a presentation surprisingly simple. It all starts with an enhanced Theme Chooser that lets you preview an impressive collection of 44 Apple-designed themes. Drag across a theme to skim through its slide designs. Once youve chosen the perfect canvas for your presentation, simply substitute placeholder text and graphics with your own words and images. Thanks to the Slide Navigator, the progress of your presentation and its organization are always in view. Easy-to-use tools let you add elements such as tables, charts, media, and shapes to your slides. Add a table with a click. Just as easily add a 3D chart that you can animate. With the Media Browser, you can drag and drop photos from your iPhoto or Aperture libraries, movies from your Movies folder, and music from your iTunes library. Make each slide in your presentation look its absolute best, using the powerful graphics tools built into Keynote. Quickly and cleanly remove the background of an image using the Instant Alpha tool. Or mask it within a predrawn shape, such as a circle or a star. With alignment and spacing guides, you can easily find the center of the slide and see if objects are spaced evenly. So anything you add to your slides graphics, images, text boxes, or shapes is placed precisely where you want it. If youre adding a flowchart or a diagram to your slide, then youll appreciate the new connection lines feature. Connection lines between two objects remain anchored, no matter what changes you make. Move the objects around, and the lines move with them.

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• SciCrunch
• 17 years ago - by Anonymous

Apache Tomcat is an open source software implementation of the Java Servlet and JavaServer Pages technologies. The Java Servlet and JavaServer Pages specifications are developed under the Java Community Process. Apache Tomcat is developed in an open and participatory environment and released under the Apache License version 2. Apache Tomcat is intended to be a collaboration of the best-of-breed developers from around the world. We invite you to participate in this open development project. Apache Tomcat powers numerous large-scale, mission-critical web applications across a diverse range of industries and organizations. Some of these users and their stories are listed on the PoweredBy wiki page.

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• SciCrunch
• 17 years ago - by Anonymous

Supports research in cellular analysis, genomics, proteomics, and drug discovery. It has merged with Thermo Fisher Scientific. One of several brands under Thermo Fisher Scientific corporation.

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• SciCrunch
• 15 years ago - by Anonymous

OMPC aims to enable reuse of the huge open and free code base of MATLAB on a free and faster growing Python platform. Running Python and MATLAB in a single interpreter avoids issues with running two separate applications. Python adds general purpose programming libraries to the convenient syntax of the language of technical computing. OMPC is not an interpreter, it lets Python to do the work. This means that if Python gets faster OMPC gets faster too. OMPC translates the m-files preserving the structure of the original programs as much as possible. Although OMPC comes with a library that emulates the features of numerical array of MATLAB there is nothing that will stop you from running the translated code the way you like it. This means that you could run the OMPC generated code on IronPython, Jython, PyPy or whatever else if you write your own numerical class. Sponsors: This resource is supported by RIKEN Brain Science Institute.

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• SciCrunch
• 17 years ago - by Anonymous

A commercial software developer.

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• SciCrunch
• 17 years ago - by Anonymous

A commercial software company focusing on doctor patient communication.

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• SciCrunch
• 17 years ago - by Anonymous

Division of Applied Biosystems selling products for the isolation, detection, quantification, amplification, and characterization of RNA.

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• SciCrunch
• 17 years ago - by Anonymous

A web interface and associated tools for easy query of public human transcriptome data by keyword, through thematic pages with list annotations. Amazonia provides a thematic entry to public transcriptomes: users may for instance query a gene on a Stem Cells page, where they will see the expression of their favorite gene across selected microarray experiments related to stem cell biology. This selection of samples can be customized at will among the 6331 samples currently present in the database. Every transcriptome study results in the identification of lists of genes relevant to a given biological condition. In order to include this valuable information in any new query in the Amazonia database, they indicate for each gene in which lists it is included. This is a straightforward and efficient way to synthesize hundreds of microarray publications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. A computer generated high quality dataset of human transcript-confirmed constitutive and alternative exons and introns. The alternative events have been delineated and annotated with various characterizations. AltExtron is the prototype database for the production version AltSplice. AltExtron is more geared towards investigating various aspects of the methodologies used, and focuses in general on the biology behind alternative splicing. The complete data used in this work is available for downloading in several flat files, containing human genes, introns, exons, isoform events, human-mouse comparisons, and additional information on GC-AG introns. Two versions of AltExtron data are available - one as prototype (for human) and another as latest build (for human, drosophila, mouse, and others) based on EMBL/GenBank (Feb 2003).

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• SciCrunch
• 17 years ago - by Anonymous

Web-based tool for identifying hot spots of aggregation in polypeptides. Aggrescan uses an aggregation-propensity scale for natural amino acids derived from in vivo experiments and on the assumption that short and specific sequence stretches modulate protein aggregation. The algorithm is shown to identify a series of protein fragments involved in the aggregation of disease-related proteins and to predict the effect of genetic mutations on their deposition propensities. It also provides new insights into the differential aggregation properties displayed by globular proteins, natively unfolded polypeptides, amyloidogenic proteins and proteins found in bacterial inclusion bodies.

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• SciCrunch
• 17 years ago - by Anonymous

A prediction algorithm based on the helix/coil transition theory. Agadir predicts the helical behaviour of monomeric peptides. It only considers short range interactions. Conditions such as pH, temperature and ionic strength are used in the calculation. Modifications of the termini are also allowed. To submit a job to Agadir, log in the calculation part using the login button in the right bottom. Then fill-in the input form and proceed to next page, etc. You will reach a final page that resumes all the input information and allows you to run the calculation. You can submit one or more peptide sequences in one-letter format. Sequences should be separated by one return character. Spaces and tabulations are automatically removed. Only standard amino acids are accepted. Agadir accepts two modifications at the N-terminus (acetylation or succynilation), and one at the C-terminus (amidation). Just choose the desired option in the input form. You can use only one set of parameters: temperature, ionic strength (calibrated for NaCl) and pH, or explore a particular range of conditions for one parameter. In the latter case the intervals between any two values are: Ionic strength 0.05 M Temperature 1 K pH 0.2 units When setting the conditions for these parameters please be aware that the allowed ranges are: Ionic strength between 0.001 and 1 M Temperature between 273 and 400 K pH between 1 and 14 Output of the prediction at the residue level is available only when submitting no more than ten peptide sequences, and without any screening of conditions. Hstaple is the Hydrophobic Staple motif, Schellman is the Shellman motif, CaH are the expecte chemical shifts of the Calpha proton, 13Ca are the alpha Carbon 13 chemical shifts, JaN is the Jalpha--nitrogen coupling.

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• SciCrunch
• 17 years ago - by Anonymous

Affymetrix Power Tools (APT) are a set of cross-platform command line programs that implement algorithms for analyzing and working with Affymetrix GeneChip arrays. APT programs are intended for power users who prefer programs that can be utilized in scripting environments and are sophisticated enough to handle the complexity of extra features and functionality. APT provides platform for developing and deploying new algorithms without waiting for the GUI implementations. This resource is supported by Affymetrix, Inc.

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• SciCrunch
• 17 years ago - by Anonymous

The goal is to understand as completely as possible the relationships between sets of inputs and outputs in signaling cells that vary both temporally and spatially. The same goal, stated from a slightly different perspective, is to understand fully how cells interpret signals in a context-dependent manner. This will involve identification of all the proteins that comprise the various signaling systems, the assessment of time-dependent information flow through the systems in both normal and pathological states, and finally the reduction of the mass of detailed data into a set of interacting theoretical models that describe cellular signaling. Sponsors: The AfCS Project was conceived under the Glue Grant Initiative of the National Institute of General Medical Sciences. Support is received from the National Institute of General Medical Sciences and the National Institute of Allergy and Infectious Diseases. Keywords: Alliance, Cellular, Signaling, Temporally, Spatially, Cell, Model,

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• SciCrunch
• 14 years ago - by Anonymous

Commercial instrument supplier for human activity monitors. ActiGraph devices are used by researchers and clinicians in hundreds of universities and research organizations in more than 56 countries. ActiGraph activity monitors are the most validated and widely used devices of their kind. ActiGraph activity monitors use triaxial accelerometers and our validated proprietary filtering algorithms to accurately measure the amount and intensity of human activity. They are powered by rechargeable lithium ion batteries, and battery charging and communication are accomplished via a standard USB connection. All ActiGraph activity monitors can be worn at the waist or wrist and are suitable for subjects of all ages. ActiGraph devices have been used in hundreds of research studies in nearly 60 countries around the world since 1992. Leading research facilities including the U.S. National Institute of Health (NIH), the Institute of Child Health in the UK, and Karolinska Institutet in Sweden rely on our products to provide objective activity measurement in dozens of areas including obesity, diabetes, sleep, elderly behavior, and athletics. ActiGraph often works with scientific organizations to develop and implement software and hardware features that reflect the evolving needs of the research community. ActiGraph devices are well recognized as some of the most accurate activity measurement products on the market. Extensive research has confirmed our accuracy against the VO2 and doubly labeled water (DLW) methods of estimating energy expenditure. Keywords: Device, Researcher, Clinician, University, Research, Organization, Obesity, Diabetes, Sleep, Elderly, Behavior, Athletics, Scientific, Activity monitor, Physical, Measurement, Human, Activity,

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• SciCrunch
• 17 years ago - by Anonymous

A life science modeling and simulation suite of applications focused on optimizing the drug discovery process. Discovery Studio makes it easier to examine the properties of large and small molecules, study systems, identify leads and optimize candidates. Discovery Studio ADME Descriptors allow scientists to eliminate compounds with unfavorable ADME characteristics early in the discovery process and evaluate proposed structural refinements prior to synthesis. Applications of predictive ADME include pharmaceutical, cosmeceutical, and environmental sciences.

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• SciCrunch
• 17 years ago - by Anonymous