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URL: http://mouse.brain-map.org/static/atlas
Proper Citation: Allen Reference Atlas - Mouse Brain (RRID:SCR_013286)
Description: A full-color, high-resolution, Web-based digital brain atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures. The Allen Mouse Brain Atlas and Reference Atlases'' data are obtained, using identical methodology, from 8-week old C57Bl/6J male mouse brain(s) prepared as unfixed, fresh-frozen tissue. The Allen Mouse Brain Reference Atlas was designed to: 1. Allow users to directly compare gene expression patterns to neuroanatomical structures in the Web application 2. Serve as a template for the development of 3D computer graphic models of the mouse brain, providing a foundation for the development of informatics based annotation tools 3. Provide a standard neuroanatomical ontology for determining structural annotation and aid in the construction of a detailed searchable gene expression database. * Coronal Atlas: 132 coronal sections evenly spaced at 100 micrometer intervals and annotated to a detail of numerous brain structures * Sagittal Atlas: 21 representative sagittal sections spaced at 200 micrometer, annotated for 71 major brain regions identified at the top level(s) of the brain structure hierarchical tree * Coronal Legend: Search for a specific structure or browse the coronal reference atlas * Sagittal Legend: Search for a specific structure or browse the sagittal reference atlas The Allen Reference Atlas can also be found in the BioPortal, http://bioportal.bioontology.org/ontologies/40133?p=terms
Abbreviations: ABA, ARA
Synonyms: Allen Mouse Brain Reference Atlas, Allen Reference Atlases, ABA Adult Mouse Brain, ARA ontology
Resource Type: atlas, data or information resource, reference atlas
Keywords: structure, adult, mouse, brain stem, cerebellum, cerebrum, molecular neuroanatomy resource, brain, neuroanatomy, c57bl/6j, male, brain structure, gene expression
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