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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
ARIAD
 
Resource Report
Resource Website
50+ mentions
ARIAD (RRID:SCR_008559) ARIAD material service resource, production service resource, reagent manufacture, service resource Cambridge, Massachusetts-based biotechnology company focused on cancer. Focus areas are blood cancers and solid tumors. Compounds: ponatinib, AP26113, ridaforolimus and AP1903., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. oncology, drug, therapy, treatment, drug development uses: FluoroFinder Cancer THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-31436 http://www.ariad.com/wt/page/regulation_kits SCR_008559 ARIAD Pharmaceuticals 2026-09-05 06:26:24 55
DrGaP
 
Resource Report
Resource Website
10+ mentions
DrGaP (RRID:SCR_008670) DrGaP software resource Designed to identify Driver Genes and Pathways in cancer genome sequencing studies. is listed by: OMICtools Cancer OMICS_00149 SCR_008670 2026-09-05 06:26:26 10
Common Terminology Criteria for Adverse Events
 
Resource Report
Resource Website
10+ mentions
Common Terminology Criteria for Adverse Events (RRID:SCR_010296) CTCAE controlled vocabulary, data or information resource, ontology A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution (NCI). owl is listed by: BioPortal
has parent organization: National Cancer Institute
Cancer nlx_157370 SCR_010296 2026-09-05 06:26:38 14
Upper-Level Cancer Ontology
 
Resource Report
Resource Website
Upper-Level Cancer Ontology (RRID:SCR_010443) CANONT controlled vocabulary, data or information resource, ontology Upper-level ontology for cancer. obo is listed by: BioPortal Cancer nlx_157620 SCR_010443 2026-09-05 06:26:42 0
FISH Oracle
 
Resource Report
Resource Website
FISH Oracle (RRID:SCR_010927) FISH Oracle data or information resource, database, software resource A web-based software tool for the integrative analysis of cancer genomics data. It stores different kinds of downstream processed data from multiple samples in a single database. A powerful search interface allows to dynamically filter the data to be displayed with respect to different criteria. The combination of AJAX technology and a fast visualization engine facilitates a highly dynamic visualization for large amounts of data. FISH Oracle 2 is able to simultaneously display different data sets, thus simplifying their comparison. Filter and display options can be changed on the fly. High quality image export enables the life scientist to easily communicate the results, e.g. in presentations or publications. A comprehensive data administration assures to keep track of the data stored in the database. array cgh, snp, genomics, visualization is listed by: OMICtools
has parent organization: University of Hamburg; Hamburg; Germany
Cancer PMID:21884636 OMICS_00721 SCR_010927 2026-09-05 06:26:50 0
AdaptiveCrawler
 
Resource Report
Resource Website
AdaptiveCrawler (RRID:SCR_000573) AdaptiveCrawler software resource, web application THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9,2022. A web crawler that can intelligently acquire social media content on the Internet to meet the specific online data source acquisition needs of cancer researchers. web crawler, acquire social media content on Internet, cancer research, is listed by: OMICtools
has parent organization: Oak Ridge National Laboratory
Cancer, Breast cancer, Lung cancer PMID:24078710 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01170 SCR_000573 Adaptive Crawler, Smart Web Crawler 2026-09-05 06:24:22 0
Wnt homepage
 
Resource Report
Resource Website
10+ mentions
Wnt homepage (RRID:SCR_000662) Wnt homepage data or information resource, portal, topical portal A resource for members of the Wnt community, providing information on progress in the field, maps on signaling pathways, and methods. The page on reagents lists many resources generously made available to and by the Wnt community. Wnt signaling is discussed in many reviews and in a recent book. There are usually several Wnt meetings per year. wnt signaling, wnt, wnt protein, wnt pathway, signaling, pathway, method, protein, reagent, bibliography has parent organization: Stanford University; Stanford; California Cancer THIS RESOURCE IS NO LONGER IN SERVICE nlx_156863 SCR_000662 the Wnt homepage 2026-09-05 06:24:23 13
Athens Research and Technology
 
Resource Report
Resource Website
1+ mentions
Athens Research and Technology (RRID:SCR_001079) commercial organization Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits. antibody, protein, biotherapeutics, autoimmune disease, cancer, coronary disease, alzheimers disease inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease Wikidata: Q30284050, nlx_152285, grid.423006.3 https://ror.org/0527dhk70 SCR_001079 Athens Research and Technology Inc. 2026-09-05 06:24:29 1
VegaMC
 
Resource Report
Resource Website
1+ mentions
VegaMC (RRID:SCR_001267) VegaMC software resource Software package that enables the detection of driver chromosomal imbalances including loss of heterozygosity (LOH) from array comparative genomic hybridization (aCGH) data. It performs a joint segmentation of a dataset and uses a statistical framework to distinguish between driver and passenger mutation. VegaMC has been implemented so that it can be immediately integrated with the output produced by PennCNV tool. In addition, it produces in output two web pages that allows a rapid navigation between both the detected regions and the altered genes. In the web page that summarizes the altered genes, the link to the respective Ensembl gene web page is reported. copy number variation, acgh, chromosomal imbalance is listed by: OMICtools
is related to: PennCNV
has parent organization: Bioconductor
Cancer PMID:22815357 Free, Available for download, Freely available OMICS_02071 SCR_001267 VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer 2026-09-05 06:24:32 1
Computer Integrated Systems for Microscopy and Manipulation
 
Resource Report
Resource Website
1+ mentions
Computer Integrated Systems for Microscopy and Manipulation (RRID:SCR_001413) CISMM training resource Biomedical technology research center that develops force technologies applicable over a wide range of biological settings, from the single molecule to the tissue, with integrated systems that orchestrate facile instrument control, multimodal imaging, and analysis through visualization and modeling. The Force Microscope Technologies Core designs instruments in an area of science where there are unusual opportunities: the measurement of forces and the integration with optical microscopy. Force technologies play the obvious role of both measuring events in the sample and modifying the sample during the experiment. It is through the microscope that the force data is correlated with simultaneous 3D optical images. The force technology development includes the magnetic bead technology in the 3D Force Microscope project, Atomic Force Microscopy in the nanoManipulator project, and Control Software to drive the instrumentation. This core is focused on providing the physical capability to perform the experiments and probe structure/property correlations. The Ideal User Interfaces core makes the connection between the user and the instrument, the model building, and the data. This includes control systems that allow the user to move the bead inside the cell culture with a handheld pen and the visualization techniques to view the optical microscope data as a rendered 3D image collocated with the force data. Using data to create, change, and understand a model is the focus of the Advanced Model Fitting and Analysis core. The quantitative reduction of images to structural, shape, and velocity parameters is the goal of Image Analysis. The immediate understanding of correlations across image fields and between data sets in the challenge of Visualization. The power of combining the strength of a computer science graphics group with a microscopy technology group is most evident in the Graphics Hardware Acceleration project, which seeks to harness the speed of graphics processors for microscope data analysis and simulation. The Advanced Technology core pushes the boundaries of the Human Computer Interface through the investigation of improved techniques for the interaction of users with virtual environments, the real time lighting of virtual settings, and the enabling of multi-person collaboration. These techniques are validated and evaluated through physiological measures in virtual environments effectiveness evaluation studies. microscope, visual analytics, image analysis, biomedical, bioinstrumatics, scanning electron microscope, light microscope, microscopy has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA Thrombosis, Lung disease, Cancer NIBIB 5-P41-EB002025 Freely Available nlx_152648 http://cismm.cs.unc.edu/ SCR_001413 UNC Chapel Hill Computer Integrated Systems for Microscopy and Manipulation 2026-09-05 06:24:34 8
National Center for Integrative Biomedical Informatics
 
Resource Report
Resource Website
1+ mentions
National Center for Integrative Biomedical Informatics (RRID:SCR_001538) data or information resource, organization portal, portal The Center develops conceptual models, computational infrastructure, an integrated knowledge repository, and query and analysis tools that enable scientists to effectively access and integrate the wealth of biological data. The National Center for Integrative Biomedical Informatics (NCIBI) was founded in October 2005 and is one of seven National Centers for Biomedical Computing (NCBC) in the NIH Roadmap. NCIBI is based at the University of Michigan as a part of the Center for Computational Medicine and Biology (CCMB). NCIBI is composed of biomedical researchers, computational biologists, computer scientists, developers and human-computer interaction specialists organized into seven major core functions. They work in interdisciplinary teams to collectively develop tools that are not only computationally powerful but also biologically relevant and meaningful. The four initial Driving Biological Projects (prostate cancer progression, Type 1 and type 2 diabetes and bipolar disorder) provide the nucleation point from which tool development is informed, launched, and tested. In addition to testing tools for function, a separate team is dedicated to testing usability and user interaction that is a unique feature of this Center. Once tools are developed and validated the goal of the Center is to share and disseminate data and software throughout the research community both internally and externally. This is achieved through various mechanisms such as training videos, tutorials, and demonstrations and presentations at national and international scientific conferences. NCIBI is supported by NIH Grant # U54-DA021519. analysis tools, bipolar disorder, code, computational infrastructure, conceptual models, data, diabetes, knowledge repository, presentations, prostate cancer, query tools, seminar material, tool development, tutorials, videos, model is listed by: 3DVC
is related to: Biological Concept Diagram Editor
is related to: Gene Interaction Extraction from the Literature
is related to: National Centers for Biomedical Computing
has parent organization: University of Michigan; Ann Arbor; USA
is parent organization of: Substructure Index-based Approximate Graph Alignment
is parent organization of: miniTUBA
is parent organization of: Michigan Molecular Interactions
is parent organization of: Cell Line Knowledge Base
is parent organization of: HubMed
is parent organization of: MiMI Plugin for Cytoscape
Type 1 diabetes, Type 2 diabetes, Diabetes, Cancer, Bipolar disorder PMID:22101971 Free, Freely available nif-0000-09660 http://portal.ncibi.org/gateway/ SCR_001538 NCIBI 2026-09-05 06:24:35 1
SamSPECTRAL
 
Resource Report
Resource Website
1+ mentions
SamSPECTRAL (RRID:SCR_001858) software resource Software that identifies cell population in flow cytometry data. It demonstrates significant advantages in proper identification of populations with non-elliptical shapes, low density populations close to dense ones, minor subpopulations of a major population and rare populations. It samples large data such that spectral clustering is possible while preserving density information in edge weights. More specifically, given a matrix of coordinates as input, SamSPECTRAL first builds the communities to sample the data points. Then, it builds a graph and after weighting the edges by conductance computation, the graph is passed to a classic spectral clustering algorithm to find the spectral clusters. The last stage of SamSPECTRAL is to combine the spectral clusters. The resulting connected components estimate biological cell populations in the data sample. software package, mac os x, unix/linux, windows, r, cell biology, clustering, flow cytometry, stem cell, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: Bioconductor
Cancer, HIV PMID:20667133 Free, Available for download, Freely available OMICS_05638, biotools:samspectral https://bio.tools/samspectral SCR_001858 SamSPECTRAL - Identifies cell population in flow cytometry data 2026-09-05 06:24:40 4
Terry Fox Research Institute
 
Resource Report
Resource Website
1+ mentions
Terry Fox Research Institute (RRID:SCR_011568) TFRI institution Launched in October 2007, TFRI is the brainchild of the Terry Fox Foundation. TFRI involves collaboration between cancer hospitals and research organizations across Canada, and will occur initially in British Columbia, Alberta, Ontario and Quebec. TFRI will support translational cancer research projects with the potential to significantly improve the health of cancer patients. TFRI is organized into functionally integrated yet geographically dispersed nodes. Regional cancer hospitals and research organizations participate in each node by providing space for researchers and by arranging for the participation of cancer patients in research projects. At each node, two node co-ordinators provide leadership, and bring together local scientific and clinical research teams to propose and manage specific projects. The TFRI headquarters team liaises with the TFRI nodes and provides direction, co-ordination and facilitates communication across the entire organization. The Terry Fox Foundation has committed a minimum of $50 million (CAN) over five years from donations obtained during the 25th anniversary of the Terry Fox Marathon of Hope and from new funds anticipated and those raised since 2005. Other partners sharing the same vision are being sought who will be asked to commit additional resources to support the ongoing work of the TFRI. has parent organization: Terry Fox Foundation Cancer grid.489333.6, nlx_149428 https://ror.org/00mtf6c40 SCR_011568 2026-09-05 06:27:07 3
NCI Thesaurus
 
Resource Report
Resource Website
10+ mentions
NCI Thesaurus (RRID:SCR_003563) NCIt controlled vocabulary, data or information resource, ontology A reference terminology and core biomedical ontology for NCI that covers approximately 100,000 key biomedical concepts with terms, codes, definitions, and more than 200,000 inter-concept relationships. It is the reference terminology for NCI, NCI Metathesaurus and NCI informatics infrastructure covering vocabulary for clinical care, translational and basic research, and public information and administrative activities. It includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities; anatomy; agents, drugs and chemicals; genes and gene products and so on. In certain areas, like cancer diseases and combination chemotherapies, it provides the most granular and consistent terminology available. It combines terminology from numerous cancer research related domains, and provides a way to integrate or link these kinds of information together through semantic relationships. NCIt features: * Stable, unique codes for biomedical concepts; * Preferred terms, synonyms, definitions, research codes, external source codes, and other information; * Links to NCI Metathesaurus and other information sources; * Over 200,000 cross-links between concepts, providing formal logic-based definition of many concepts; * Extensive content integrated from NCI and other partners, much available as separate NCIt subsets * Updated frequently by a team of subject matter experts. NCIt is a widely recognized standard for biomedical coding and reference, used by a broad variety of public and private partners both nationally and internationally including the Clinical Data Interchange Standards Consortium Terminology (CDISC), the U.S. Food and Drug Administration (FDA), the Federal Medication Terminologies (FMT), and the National Council for Prescription Drug Programs (NCPDP). thesaurus, clinical, treatment, prevention, biomedical, owl, health, drug, chemotherapy is listed by: OBO
is listed by: BioPortal
is related to: NCI Metathesaurus
is related to: OnEx - Ontology Evolution Explorer
has parent organization: National Cancer Institute
Cancer See license, http://evs.nci.nih.gov/ftp1/NCI_Thesaurus/NCI_THESAURUS_license.txt nlx_157698 ftp://ftp1.nci.nih.gov/pub/cacore/EVS/, https://cabig.nci.nih.gov/concepts/EVS/, https://wiki.nci.nih.gov/display/EVS/NCI+Thesaurus+%28NCIt%29, http://nciterms.nci.nih.gov, http://purl.bioontology.org/ontology/NCIT http://ncicb.nci.nih.gov/core/EVS SCR_003563 ncithesaurus 2026-09-05 06:25:05 10
Janssen Research and Development
 
Resource Report
Resource Website
1+ mentions
Janssen Research and Development (RRID:SCR_003904) Janssen R&D commercial organization Pharmaceutical company with a mission to discover and develop innovative medicines that ease patients'' suffering, and solve the most important unmet medical needs of our time. As one of the Janssen Pharmaceutical Companies, their strategy is to identify the biggest unmet medical needs and match them with the best science, internal or external, to find solutions for patients worldwide. They leverage their world-class discovery and development expertise, and operational excellence, to bring innovative, effective treatments in five therapeutic areas: cardiovascular and metabolism, immunology, infectious diseases and vaccines, neuroscience, and oncology. pharmaceutical, oncology, immunology, neuroscience, vaccine, medical is related to: Investigator Databank
is related to: eTRIKS
is related to: Predict-TB
is related to: OncoTrack
is related to: European Lead Factory
is related to: EU-AIMS
is related to: GetReal
is related to: Kinetics for Drug Discovery
is related to: MIP-DILI
is related to: NEWMEDS
is related to: ORBITO
is related to: PharmaCog
is related to: PREDECT
is related to: Structural Genomics Consortium
is related to: Open PHACTS
is related to: EMIF
is parent organization of: Investigator Databank
Infectious disease, Cardiovascular disease, Metabolic disease, Immunological disorder, Cancer nlx_158241 SCR_003904 Janssen Research & Development LLC, Janssen Research & Development 2026-09-05 06:25:10 2
Althia
 
Resource Report
Resource Website
Althia (RRID:SCR_003918) Althia commercial organization A biomedical company in Spain focused on the development of new tools for diagnosis and personalized treatment of oncological diseases and precancerous. It has three areas of activity in permanent innovation: Assistance in Diagnosis / Prognosis in solid and hematological tumors, Translational Research covering the gap between basic and clinical research and advanced radiotherapy treatments based image-guided single dose (SD-IGRT). Their objectives are: * Provide an integrated tissue and tumor molecular phenotype analysis using the most advanced technologies in diagnosis, to guide the most appropriate treatment for each patient. * Discover and validate molecular patterns by molecular systems and platforms including pathology, to generate predictive algorithms through computational biology, evolution and determining the response of patients with a particular tumor profile. Althia has laboratories equipped with the most advanced equipment and technologies in Barcelona and Granada Genyo Center, with offices in Madrid. oncology, diagnosis, prognosis, solid tumor, hematological tumor, translational, radiation, phenotype, analysis, pathology, hematology, hereditary is related to: PRECISESADS Cancer, Tumor, Solid tumor, Hematological tumor, Precancer nlx_158279 SCR_003918 Althia Health Ltd., Althia Health, Advanced Laboratories of Translational Health, SL, S.L. 2026-09-05 06:25:11 0
Big Ten Cancer Research Consortium
 
Resource Report
Resource Website
Big Ten Cancer Research Consortium (RRID:SCR_004025) BTCRC consortium, data or information resource, organization portal, portal A consortium that aims to transform cancer research through collaborative oncology trials that leverage the scientific and clinical expertise of the Big Ten universities. The goal is to align the conduct of cancer research through collaborative, hypothesis-driven, highly translational oncology trials that leverage the scientific and clinical expertise. The clinical trials that will be developed will be linked to molecular diagnostics, enabling researchers to understand what drives the cancers to grow and what might be done to stop them from growing. The consortium also leverages geographical locations and existing relationships among the cancer centers. One of the consortium's goals is to harmonize contracts and scientific review processes to expedite clinical trials. The consortium will only focus on phase 0 to II trials because larger trials - even a randomized phase II trial - are difficult to conduct at a single cancer center. oncology, drug development, basic research, clinical trial, clinical, genitourinary, gastrointestinal, thoracic, breast, nanotechnology, virus, triple-negative cell is affiliated with: Penn State Milton S. Hershey Medical Center; Pennsylvania; USA
is affiliated with: University of Wisconsin-Madison; Wisconsin; USA
is affiliated with: Rutgers University; New Jersey; USA
is affiliated with: Northwestern University; Illinois; USA
is affiliated with: University of Nebraska; Nebraska; USA
is affiliated with: University of Minnesota Twin Cities; Minnesota; USA
is affiliated with: Michigan State University; Michigan; USA
is affiliated with: University of Michigan; Ann Arbor; USA
is affiliated with: University of Iowa; Iowa; USA
is affiliated with: Indiana University; Indiana; USA
is affiliated with: University of Illinois College of Medicine; Illinois; USA
has parent organization: Hoosier Cancer Research Network
Cancer Public nlx_158452 SCR_004025 Big Ten CRC 2026-09-05 06:25:13 0
DanStem
 
Resource Report
Resource Website
1+ mentions
DanStem (RRID:SCR_004021) DanStem data or information resource, portal, topical portal Center consisting of 9 research groups who all address basic questions in stem cell and developmental biology with the overall aim of developing new stem cell-based therapeutic approaches for diabetes and cancer. DanStem comprises two sections: * The Novo Nordisk Foundation Section for Basic Stem Cell Biology (BasicStem) * The Section for Strategic Translational Stem Cell Research and Therapy (TransStem) DanStem was established as a result of a series of international recruitments coupled with internationally recognized research groups focused on insulin producing beta cells and cancer research already located at the University of Copenhagen. They all have well-established, international collaborations and actively participate in several international scientific consortia. DanStem is also active in training undergraduates, PhD students and postdocs. stem cell, beta cell development, beta cell, insulin is related to: Beta Cell Biology Consortium
has parent organization: University of Copenhagen; Copenhagen; Denmark
Diabetes, Cancer Novo Nordisk Foundation ;
Danish Council for Strategic Research
nlx_158446 SCR_004021 The Danish Stem Cell Center, Danish Stem Cell Center, DanStem - The Center for Stem Cell Research, Danish Center for Stem Cell Research 2026-09-05 06:25:13 4
NYU Data Catalog
 
Resource Report
Resource Website
NYU Data Catalog (RRID:SCR_004012) NYU Data Catalog catalog, data or information resource, database A searchable data catalog that facilitates researchers'' access to large datasets available either publicly or through institutional or individual licensing. Dataset records include information about the content of the dataset, how to access the dataset, and local experts within NYULMC and NYU to assist in the use of these datasets. The data catalog will expand to include internally generated datasets from NYULMC and NYU in the near future. Use the contact form if you are interested in submitting a dataset to the data catalog. data set, health, population, health care Cancer, Chronic disease The community can contribute to this resource nlx_158439 SCR_004012 NYU Health Sciences Library Data Catalog 2026-09-05 06:25:13 0
Experimental Pharmacology and Oncology Berlin-Buch
 
Resource Report
Resource Website
1+ mentions
Experimental Pharmacology and Oncology Berlin-Buch (RRID:SCR_003954) EPO commercial organization A small and medium-sized enterprise (SME) that has expertise in preclinical pharmacology, pharmacokinetics, and toxicology for the characterization of novel anticancer therapeutics and predictive biomarkers like: cytostatics, biologicals (peptides, antibodies), (anti)-hormones, immunomodulators (cytokines), and gene therapeutics. EPO has modern laboratories licensed for animal experiments and gene technology (S2) and a broad panel of murine and human tumor models growing in immunocompetent (SPF-quality, syngeneic strains) or immunodeficient mice (nude, SCID, NOD/SCID). EPO has established imaging technologies to monitor in vivo tumor growth. tumor model, pharmaceutical, oncology, in vitro, in vivo, antitumor, preclinical, pharmacology, pharmacokinetics, toxicology, anticancer, therapeutic, biomarker, imaging, testing, validation, target is related to: OncoTrack Tumor, Cancer nlx_158355 SCR_003954 EPO - Experimental Pharmacology & Oncology GmbH, Experimental Pharmacology & Oncology GmbH, Experimental Pharmacology & Oncology Berlin-Buch, Experimental Pharmacology & Oncology Berlin-Buch GmbH, EPO Berlin-Buch GmbH, EPO-GmbH 2026-09-05 06:25:11 2

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