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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MedParse Resource Report Resource Website |
MedParse (RRID:SCR_021528) | data processing software, software application, software resource | Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/medparse/ | SCR_021528 | 2026-09-12 01:01:10 | 0 | |||||||||
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Argus Resource Report Resource Website 1+ mentions |
Argus (RRID:SCR_021585) | data or information resource, portal, project portal, software resource | Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior. | Analysis, quantification, socially interacting zebrafish, OpenBehavior |
is listed by: OpenBehavior is listed by: SoftCite is related to: Argus |
DOI:10.3758/s13428-018-1083-y | Free, Freely available | SCR_021619 | SCR_021585 | 2026-09-12 01:01:10 | 1 | ||||||||
|
MouseMove project Resource Report Resource Website |
MouseMove project (RRID:SCR_021581) | data or information resource, portal, project portal | Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality. | Open Field behavior analysis, mice after experimental stroke, reduced locomotor activity, quantify laterality deficits, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove |
DOI:10.1038/srep16171 | Free, Freely available | SCR_021581 | MouseMove system | 2026-09-12 01:01:10 | 0 | ||||||||
|
Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | data or information resource, portal, project portal | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-09-12 01:01:10 | 1 | ||||||||
|
Stytra Resource Report Resource Website |
Stytra (RRID:SCR_021500) | software resource, software toolkit | Open source software Python package to control stimulation and track behaviour.Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. | Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior |
is listed by: OpenBehavior is related to: Stytra project |
DOI:10.1371/journal.pcbi.1006699 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/stytra/ | SCR_021500 | 2026-09-12 01:02:58 | 0 | ||||||||
|
Worm Behavior Platform Resource Report Resource Website |
Worm Behavior Platform (RRID:SCR_021501) | software resource, software toolkit | Software tool as repository of documentation, software, and discussions to share worm tracking data and analysis routines.Open access repository for storing, accessing, and filtering data; interchange format for notating single or multi worm behavior; and file formats written in Python for feature extraction, review, and analysis. | Worm behavior data analysis, worm behavior data sharing, worm behavior data, Caenorhabditis elegans behavioral data, Worm tracker Commons Object Notation, OpenBehavior |
is listed by: OpenBehavior is related to: Worm Behavior Platform project |
DOI:10.1038/s41592-018-0112-1 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/worm-behavior-platform/ | SCR_021501 | Tracker Commons | 2026-09-12 01:02:58 | 0 | |||||||
|
Behavioral Observation Research Interactive Software Resource Report Resource Website 10+ mentions |
Behavioral Observation Research Interactive Software (RRID:SCR_021509) | BORIS | software application, software resource, standalone software | Open source event logging software for video/audio coding and live observations.Multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations. | Specific coding environment, computer based review, previously recorded videos review, live observations review, OpenBehavior |
is listed by: OpenBehavior is related to: Behavioral Observation Research Interactive Software project |
DOI:10.1111/2041-210x.12584 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/boris/ | SCR_021509 | 2026-09-12 01:02:58 | 10 | |||||||
|
ArControl Resource Report Resource Website 1+ mentions |
ArControl (RRID:SCR_021605) | software application, software resource, standalone software | Software tool as Arduino UNO/Mega based, visual programming and real-time behavioral platform for neuroscience. It can run Go/No-Go, 2AFPC and Optogenetic stimulation tasks. Stand alone and intuitive Gaphical User Interface application.Part of ArControl system. | visual programming, real-time behavioral platform, control devices, deliver stimulation, monitor behavioral response, OpenBehavior |
is listed by: OpenBehavior is related to: ArControl project |
DOI:10.3389/fnbeh.2017.00244 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/arcontrol/ | SCR_021605 | 2026-09-12 01:02:58 | 1 | ||||||||
|
BonVision Resource Report Resource Website 1+ mentions |
BonVision (RRID:SCR_021534) | software resource, software toolkit | Open source software package for creating and controlling visual environments.Software package for Bonsai which allows for control of 2D and 3D environments. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision project |
DOI:10.1101/2020.03.09.983775 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/bonvision/ | SCR_021534 | 2026-09-12 01:02:58 | 1 | ||||||||
|
FaceSync Resource Report Resource Website |
FaceSync (RRID:SCR_021396) | software resource, software toolkit | Open source software Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions.Framework for recording facial expressions with head mounted cameras. | Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools |
is listed by: OpenBehavior is related to: FaceSync project |
PMID:32185017 | Free, Available for download, Freely Available | biotools:FaceSync | https://edspace.american.edu/openbehavior/project/facesync/, https://bio.tools/FaceSync | SCR_021396 | 2026-09-12 01:02:58 | 0 | |||||||
|
D-Track Resource Report Resource Website |
D-Track (RRID:SCR_021394) | software resource, software toolkit | Software package to track object in 3D based on 3D schematics of scene.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins. | Object tracking, track aquatic animals, dolphin tracker, 3D video tracking, analyse movements, OpenBehavior |
is listed by: OpenBehavior is related to: D-Track project |
DOI:10.1371/journal.pone.0201614 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/d-track/ | SCR_021394 | 2026-09-12 01:02:58 | 0 | ||||||||
|
AutoPilot Resource Report Resource Website 1+ mentions |
AutoPilot (RRID:SCR_021518) | software resource, software toolkit | Software tool as open source Python framework for behavioral neuroscience that distributes experiments over networked swarms of Raspberry Pis. Toolkit of flexible modules to design experiments without rigid programming and API limitations. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot project |
DOI:10.1101/807693 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autopilot/ | SCR_021518 | Autopilot | 2026-09-12 01:02:58 | 1 | |||||||
|
DeepPoseKit Resource Report Resource Website 1+ mentions |
DeepPoseKit (RRID:SCR_021405) | software resource, software toolkit | Software toolkit with high level API for 2D pose estimation of user defined keypoints using deep learning.Written in Python and built using Tensorflow and Keras.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior. | 2D pose estimation, animal pose estimation, animal behavior, DeepLabCut, Leap, OpenBehavior |
is listed by: OpenBehavior is related to: DeepPoseKit project |
DOI:10.7554/elife.47994 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepposekit/ | SCR_021405 | 2026-09-12 01:02:58 | 2 | ||||||||
|
DeepSqueak Resource Report Resource Website 10+ mentions |
DeepSqueak (RRID:SCR_021524) | software resource, software toolkit | Software MATLAB package for high throughput ultrasonic vocalizations detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak project |
DOI:10.1038/s41386-018-0303-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepsqueak/ | SCR_021524 | 2026-09-12 01:02:58 | 15 | ||||||||
|
Pi-based Remote Acquisition Technology for Motion Capture Resource Report Resource Website 1+ mentions |
Pi-based Remote Acquisition Technology for Motion Capture (RRID:SCR_022327) | PiRATeMC | software resource, software toolkit | Software data management pipeline for camera synchronization and combined data directories. | OpenBehavior, camera synchronization, combined data directories, data management |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture project |
DOI:10.1101/2021.07.23.453577 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/piratemc/ | SCR_022327 | 2026-09-12 01:03:00 | 1 | |||||||
|
Rasberry rat Resource Report Resource Website 1+ mentions |
Rasberry rat (RRID:SCR_023467) | software repository, software resource | Software Python platform for recording, converting, and uploading videos to cloud and for performing scheduled video recordings. Repository also includes wiki section with comprehensive guide to setting up Raspberry Pis for this purpose. Raspberry Pis are often cheaper than camcorder and can produce HD video. They are also equipped with infrared camera, making them ideal for recordings of animals that are active in low light conditions. | recording, converting, uploading, videos, video recordings, seting up and recording home cage videos, OpenBehavior, | is listed by: OpenBehavior | https://edspace.american.edu/openbehavior/project/raspberry_rat/, https://github.com/lapphe/raspberry_rat/wiki | SCR_023467 | Rasberry_rat | 2026-09-12 01:03:04 | 3 | |||||||||
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Anipose Resource Report Resource Website 1+ mentions |
Anipose (RRID:SCR_023041) | software resource, software toolkit | Software package for 3D pose estimation. Uses DeepLabCut for 2D tracking and uses triangulation methods to project pose estimations into three dimensions.Toolkit for robust markerless 3D pose estimation. | OpenBehavior, 3D pose estimation, project pose estimations into three dimensions, markerless 3D pose estimation |
uses: DeepLabCut is listed by: OpenBehavior is related to: DeepLabCut Project |
McKnight Foundation ; New York Stem Cell Foundation ; NINDS DP2NS105555; NINDS F31NS115477; NINDS R00 NS088193; NINDS R01NS102333; NINDS R01NS111479; NINDS U19NS104655; NINDS U19NS112959; Pew Charitable Trusts ; Searle Scholars Program ; Sloan Research Fellowship ; Washington Research Foundation |
PMID:34592148 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=Anipose | SCR_023041 | 2026-09-12 01:03:03 | 4 | |||||||
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Mouse Behavioral Analysis Toolbox Resource Report Resource Website 1+ mentions |
Mouse Behavioral Analysis Toolbox (RRID:SCR_023291) | MouBeAT | software resource, software toolkit | Software package to analyze different behavioral tests in rodents semi-automatically. These tests include Open Field (OF), Elevated Plus Maze (EPM), Y-maze (YM) test and Morris Water Maze (MWM). | OpenBehavior, behavioral tests, behavioral tests analysis, tests in rodents |
uses: ImageJ is listed by: OpenBehavior |
European Regional Development Fund ; Ministry of Science and Innovation ; Spain |
PMID:30245618 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/moubeat/ | SCR_023291 | 2026-09-12 01:03:04 | 1 | ||||||
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Rtrack Resource Report Resource Website |
Rtrack (RRID:SCR_023025) | software resource, software toolkit | Software R package for analysis of paths from spatial tracking experiments such as Morris water maze and calculation of goal finding strategies. Used for in depth analysis of tracking coordinates from video. | OpenBehavior, process raw spatial tracking data, calculate behavioural strategies, spatial tracking experiments, Morris water maze |
is listed by: OpenBehavior is listed by: CRAN |
DOI:10.1101/2020.02.27.967372v1.full.pdf | Free, Available for download, Freely available | https://rupertoverall.net/Rtrack/, https://edspace.american.edu/openbehavior/?s=Rtrack | SCR_023025 | 2026-09-12 01:03:03 | 0 | ||||||||
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Wheel Running Activity acQuisition Resource Report Resource Website |
Wheel Running Activity acQuisition (RRID:SCR_023353) | WRAQ | software resource | Open source microcontroller based system for wheel running activity in mice.Used to track circadian rhythms of rodents using microcontroller, powered by lithium polymer battery, and surveys exercise activity for up to 30 days. Data can be stored on microSD card or using online server using WiFi connection. Python software provides system interface with ActogramJ to analyze chronobiological aspects of data.Repository includes guide for installing integrated developmental environment and dependent libraries for building and setting up WRAQ systems - WRAQ and WRAQ-Wifi. WRAQ and WRAQ-WiFi are based on Adafruit Adalogger and DFRobot FireBeetle ESP32 connected to 4- and 8-bit binary counters receiving signal from reed switch attached to 5-inch flying saucer respectively. | OpenBehavior, instrument, building and setting up WRAQ systems, measure mouse wheel running activity, mouse wheel running, monitor wheel running activity, | is listed by: OpenBehavior | PMID:34479979 | Free, Freely available | https://edspace.american.edu/openbehavior/project/wraq/ | SCR_023353 | WRAQ system, Wheel Running Activity acQuisition system | 2026-09-12 01:00:38 | 0 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
