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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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North Dakota State University; North Dakota; USA Resource Report Resource Website 1+ mentions |
North Dakota State University; North Dakota; USA (RRID:SCR_001110) | NDSU | university | Public research university in North Dakota, USA. It is a land-grant university that focuses on agriculture and the applied sciences. In addition, it offers undergraduate and graduate degrees in a wide variety of areas including engineering, science and mathematics, health professions, business, and agriculture and food systems studies. | public, research, land grant, agriculture, applied sciences, food systems, health profession |
is parent organization of: NDSU Center for Protease Research is parent organization of: North Dakota State University Labs and Facilities is parent organization of: North Dakota State University School of Pharmacy; North Dakota; USA |
Wikidata:Q2000624, grid.261055.5, nlx_71768, ISNI:0000 0001 2293 4611, Crossref funder ID:100007518 | https://ror.org/05h1bnb22 | SCR_001110 | North Dakota State University | 2026-09-05 06:24:29 | 1 | |||||||
|
University of Oklahoma; Oklahoma; USA Resource Report Resource Website 1+ mentions |
University of Oklahoma; Oklahoma; USA (RRID:SCR_001074) | OU | university | A coeducational public research university located in Oklahoma, USA. The institution confers undergraduate and graduate degrees in fields such as law, medicine, aviation, energy management, history of science, and Native American studies. | public, research, university, undergraduate, graduate |
is parent organization of: Development of a Specific-Pathogen-Free Baboon Colony is parent organization of: University of Oklahoma College of Medicine; Oklahoma; USA is parent organization of: Amblyomma Americanum (Lone Star Tick) cDNA Sequencing is parent organization of: Baboon Research Resouces is parent organization of: Cryptococcus Neoformans cDNA Sequencing is parent organization of: University of Oklahoma Labs and Facilities is parent organization of: University of Oklahoma Health Sciences Center Laboratory for Molecular Biology and Cytometry Research Core Facility is parent organization of: University of Oklahoma Samuel Roberts Nobel Microscopy Laboratory Core Facility is parent organization of: University of Oklahoma Health Sciences Center OK INBRE Data Science Core Facility is parent organization of: University of Oklahoma Protein Production and Characterization Core Facility is parent organization of: University of Oklahoma Biomolecular Structure Core Facility is parent organization of: University of Oklahoma Health Sciences Center Tissue Pathology and Biospecimen Core Facility is parent organization of: University of Oklahoma College of Medicine Immunology and Informatics Core Facility is parent organization of: University of Oklahoma Health Sciences Center Ocular Immunobiology Core Facility is parent organization of: University of Oklahoma Health Sciences Live Animal Imaging and Analysis Core Facility is parent organization of: University of Oklahoma Health Sciences Center Cellular Imaging and Morphometric Analysis Core Facility |
nlx_27458, grid.266900.b, Wikidata:Q640652, ISNI:0000 0004 0447 0018, Crossref funder ID:100007926 | https://ror.org/02aqsxs83 | SCR_001074 | University of Oklahoma | 2026-09-05 06:24:29 | 1 | |||||||
|
University of Adelaide; Adelaide; Australia Resource Report Resource Website 1+ mentions |
University of Adelaide; Adelaide; Australia (RRID:SCR_001075) | university | Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research. | public, research, university, adelaide, australia, research, commercialization |
is parent organization of: Neural Network Resources is parent organization of: Centre for Automotive Safety Research |
Wikidata:Q15574, nlx_73637, ISNI:0000 0004 1936 7304, Crossref funder ID:501100001786, grid.1010.0 | https://ror.org/00892tw58 | SCR_001075 | 2026-09-05 06:24:29 | 2 | |||||||||
|
Speech Perception Resource Report Resource Website |
Speech Perception (RRID:SCR_001114) | data or information resource, portal, topical portal | An entry of the Cognitive Atlas which defines the term speech perception. | cognitive science, language, processing language | is related to: Cognitive Atlas | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_145380 | SCR_001114 | 2026-09-05 06:24:29 | 0 | |||||||||
|
Athens Research and Technology Resource Report Resource Website 1+ mentions |
Athens Research and Technology (RRID:SCR_001079) | commercial organization | Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits. | antibody, protein, biotherapeutics, autoimmune disease, cancer, coronary disease, alzheimers disease | inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease | Wikidata: Q30284050, nlx_152285, grid.423006.3 | https://ror.org/0527dhk70 | SCR_001079 | Athens Research and Technology Inc. | 2026-09-05 06:24:29 | 1 | ||||||||
|
bsseq Resource Report Resource Website 1+ mentions |
bsseq (RRID:SCR_001072) | data analysis software, data processing software, sequence analysis software, software application, software resource | R package with tools for analyzing and visualizing bisulfite sequencing data. | bisulfite sequencing, analyze, r, sequence analysis software, data analysis software, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Bioconductor |
Free, Available for download, Freely available | OMICS_01847, biotools:bsseq | https://bio.tools/bsseq | SCR_001072 | bsseq - Analyze manage and store bisulfite sequencing data | 2026-09-05 06:24:29 | 8 | |||||||
|
MmPalateMiRNA Resource Report Resource Website 1+ mentions |
MmPalateMiRNA (RRID:SCR_001070) | data analysis software, data processing software, software application, software resource, source code | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software R package written for analysis of murine palate miRNA two-color expression data. | murine, palate, mirna, two color expression, open source, r |
is listed by: OMICtools is hosted by: Bioconductor |
PMID:23298515 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00788 | SCR_001070 | 2026-09-05 06:24:29 | 1 | ||||||||
|
R453Plus1Toolbox Resource Report Resource Website 1+ mentions |
R453Plus1Toolbox (RRID:SCR_001105) | data analysis software, data processing software, sequence analysis software, software application, software resource, software toolkit | R software toolbox of functions for the analysis of data generated by Roche's 454 sequencing platform. Additional functions are included for quality assurance, annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. A pipeline for the detection of structural variants is provided. | genome, sequence, visualization, structural variants, r, sequence analysis software |
is listed by: OMICtools is hosted by: Bioconductor |
PMID:21349869 | Free, Available for download, Freely available | OMICS_01354 | SCR_001105 | 2026-09-05 06:24:29 | 4 | ||||||||
|
Academy Biomedical Company Resource Report Resource Website |
Academy Biomedical Company (RRID:SCR_001108) | commercial organization | Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis. | antibody, cardiovascular, athersclerosis, antibody supplier | nlx_152249 | SCR_001108 | Academy Bio-Medical Company, Academy Biomedical Company Inc. | 2026-09-05 06:24:29 | 0 | ||||||||||
|
RmiR Resource Report Resource Website |
RmiR (RRID:SCR_001069) | RmiR | data analysis software, data processing software, sequence analysis software, software application, software resource | R package that contains functions to merge microRNA and respective targets using different databases. | micro rna, mrna, function, target, r, sequence analysis software |
is listed by: OMICtools has parent organization: Bioconductor |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00789 | https://rdrr.io/bioc/RmiR/ | SCR_001069 | 2026-09-05 06:24:29 | 0 | |||||||
|
BreakFusion Resource Report Resource Website 1+ mentions |
BreakFusion (RRID:SCR_001102) | BreakFusion | software resource | Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data. | computational pipeline, gene fusions, rna, sequence, data, perl, c++ |
is listed by: OMICtools has parent organization: University of Texas MD Anderson Cancer Center |
PMID:22563071 DOI:10.1093/bioinformatics/bts272 |
Free, Available for download, Freely available | OMICS_01342 | SCR_001102 | 2026-09-05 06:24:29 | 3 | |||||||
|
Virginia Commonwealth University School of Medicine; Virginia; USA Resource Report Resource Website |
Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) | VCU SOM | university | Medical school division of Virginia Commonwealth University. | virginia, medical, medicine, commonwealth, medical school, continuing medical education, residency | has parent organization: Virginia Commonwealth University; Virginia; USA | nlx_64661 | SCR_001061 | VCU School of Medicine | 2026-09-05 06:24:28 | 0 | ||||||||
|
U.S. Department of Education Resource Report Resource Website 1+ mentions |
U.S. Department of Education (RRID:SCR_001060) | ED | institution | The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education. | education, federal, financial aid, fafsa, government department | is parent organization of: National Institute on Disability and Rehabilitation Research | Available to groups within the United States of America | grid.419881.d, Crossref funder ID: 100000138, Wikidata: Q861556, ISNI: 0000 0001 2176 2483, nlx_143871 | https://ror.org/021adze67 | SCR_001060 | ED.gov, United States Department of Education | 2026-09-05 06:24:28 | 2 | ||||||
|
NPEBseq Resource Report Resource Website 1+ mentions |
NPEBseq (RRID:SCR_001014) | NPEBseq | software resource | A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data. | rna, rna sequence, seq, empirical, Bayesian, nonparametric | is listed by: OMICtools | PMID:23981227 | OMICS_01312 | http://bioinformatics.wistar.upenn.edu/NPEBseq | SCR_001014 | 2026-09-05 06:24:28 | 1 | |||||||
|
SplitSeek Resource Report Resource Website 1+ mentions |
SplitSeek (RRID:SCR_001012) | data analysis software, data processing software, sequence analysis software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 20, 2016. A program for de novo prediction of splice junctions in RNA-seq data. | bioinformatics alignment, sequence analysis software, de novo, prediction, rna seq, rna, splice junction, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:20236510 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:splitseek, OMICS_01253 | https://bio.tools/splitseek | http://www.uppmax.uu.se/software/splitseek | SCR_001012 | 2026-09-05 06:24:28 | 1 | ||||||
|
Hytest Resource Report Resource Website 1+ mentions |
Hytest (RRID:SCR_001133) | commercial organization | A commercial antibody supplier that specializes in high-quality monoclonal antibodies and antigens for the diagnostic industry. | antibody, monoclonal, antigen, diagnostic, research and development, r and d | nlx_152378, grid.417767.4, Wikidata: Q5952196 | https://ror.org/031cpdm45 | SCR_001133 | HyTest Ltd. | 2026-09-05 06:24:29 | 5 | |||||||||
|
ASC Resource Report Resource Website 1+ mentions |
ASC (RRID:SCR_001013) | ASC | software resource | Borrows information across sequences to establish prior distribution of sample variation, so that biological variation can be accounted for even when replicates are not available. | sample variation, rna, dna, biology, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Brown University; Rhode Island; USA |
biotools:sqn, OMICS_01298 | https://bio.tools/sqn | SCR_001013 | 2026-09-05 06:24:28 | 1 | ||||||||
|
BioLegend Resource Report Resource Website 5000+ mentions |
BioLegend (RRID:SCR_001134) | commercial organization | Commercial antibody supplier and developer for biomedical research. These products are compatible with use in flow cytometry and mass cytometry, immunoprecipitation and chip, western blotting, immunofluorescence microscopy, and quantitative multiplexing. | commercial, antibody, reagent, biomedical, research, san diego | nlx_152302 | SCR_001134 | 2026-09-05 06:24:29 | 6621 | |||||||||||
|
Jmosaics Resource Report Resource Website |
Jmosaics (RRID:SCR_001094) | data analysis software, data processing software, sequence analysis software, software application, software resource | R software that detects enriched regions of ChIP-seq data sets jointly. | chip seq, data, genomics, sequencing, r, sequence analysis software |
is listed by: OMICtools is hosted by: Bioconductor |
Free, Available for download, Freely available | OMICS_00445 | SCR_001094 | 2026-09-05 06:24:29 | 0 | |||||||||
|
GDC Resource Report Resource Website 1+ mentions |
GDC (RRID:SCR_001007) | GDC | data analysis software, data management software, data processing software, software application, software resource | A C++ application designed for compression of genome collections from the same species. | compression, genome collection, c++, genome, software |
is listed by: OMICtools is hosted by: GitHub |
DOI:10.1038/srep11565 | Source code available for download | OMICS_00958 | https://github.com/refresh-bio/GDC2 | SCR_001007 | GDC 2, Genome Differential Compressor, Genome Differential Compressor (GDC) | 2026-09-05 06:24:28 | 1 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
