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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
International Alliance of Patients Organizations
 
Resource Report
Resource Website
International Alliance of Patients Organizations (RRID:SCR_004073) IAPO community building portal, data or information resource, portal A global alliance representing patients of all nations across all disease areas and promoting patient-centered healthcare across the world. They represent people who suffer from diseases, disabilities, illnesses, impairments or syndromes and work with communities of patients to get their voices heard by all involved in healthcare. With the help of their members and collaborating organizations, they work towards patient-centered healthcare throughout the world. healthcare is related to: GetReal nlx_158518 SCR_004073 SciCrunch Registry International Alliance of Patients'' Organizations 2026-10-31 12:13:41 0
Kyoto University; Kyoto; Japan
 
Resource Report
Resource Website
Kyoto University; Kyoto; Japan (RRID:SCR_004108) Kyodai university National university in Kyoto, Japan. It is the second oldest Japanese university, one of Asia highest ranked universities and one of Japan National Seven Universities. is parent organization of: Kyoto Encyclopedia of Genes and Genomes Expression Database
is parent organization of: GenomeNet
is parent organization of: GLIDA : GPCR-Ligand Database
is parent organization of: ODB - Operon database
is parent organization of: KEGG
is parent organization of: National Bio Resource Project for the Rat.
is parent organization of: BSORF - Bacillus Subtilis Genome Database
is parent organization of: DINIES
is parent organization of: NBRP Medaka Pattern Match
is parent organization of: CNACS
Wikidata:Q336264, grid.258799.8, ISNI:0000 0004 0372 2033, nlx_60798, Crossref funder ID:501100005683 https://ror.org/02kpeqv85 SCR_004108 SciCrunch Registry 2026-10-31 12:13:38 0
Ontology of Physics for Biology
 
Resource Report
Resource Website
Ontology of Physics for Biology (RRID:SCR_004144) OPB controlled vocabulary, data or information resource, ontology A reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms. owl is listed by: BioPortal nlx_157536 SCR_004144 SciCrunch Registry 2026-10-31 12:13:39 0
EU-ADR
 
Resource Report
Resource Website
1+ mentions
EU-ADR (RRID:SCR_004028) EU-ADR consortium, data or information resource, organization portal, portal Consortium that created the capability to detect Adverse Drug Response (ADR) signals by creating the infrastructure for large-scale monitoring of drug safety using electronic health records (EHR). The platform leverages EHR''''s comprising demographics, drug use and clinical data of over 30 million patients from several European countries. Special attention was given to patient groups that are not routinely involved in clinical trials, for ethical or practical reasons (e.g. pregnant women, elderly people, people using many drugs simultaneously, and children). This project also studies and compares a number of different techniques that all aim to detect unexpected or disproportional rates of events. The algorithms that they studied originate not only from the field of (pharmaco)epidemiology, but also from fields such as bio-terrorism, machine learning, and classical signal detection. EU-ADR specific objectives are: To detect events, To relate these events to drugs, To develop hypothesis that explain adverse events, To detect adverse events earlier, and To avoid false positives. The web-based platform is available at https://bioinformatics.ua.pt/euadr/ EU-ADR has contributed to the ability to conduct better drug safety studies based on the re-use of healthcare data. By facilitating the early detection of adverse drug reactions, but also providing key information on populations at risk, potential drug interactions, potential underlying mechanisms and intervening pathways in adverse events, etc., the project will allow for improved and more complete information to be available for drug and healthcare delivery, leading to increased patient safety and its associated cost savings. The EU-ADR system can be considered as a complementary tool to already existing pharamcovigilance systems. Should the system be widespread in the long term, it has the potential to contribute to the development of future electronic health record systems, insofar as the expected benefits of these IT tools are only fully attainable when EHRs develop themselves in consistency, richness and formats that allow them to be subject of such tools. In anticipation, EU-ADR has been designed to be modular and scalable, so that different EHR databases (other than those participating in the Consortium) can be progressively enlisted in the future, adopt the software for data extraction and therefore become susceptible of exploitation by the system, for maximum global effect. adverse drug reaction, clinical, biomedical, drug safety, electronic health record, demographic, drug use, clinical data, late adult human, child, young human, pregnant, drug, adverse event, signal detection, drug development, data sharing, text mining, epidemiology, database, data set, data repository, text extraction software is listed by: Consortia-pedia
is related to: Mar Institute of Medical Research Foundation
is related to: University of Aveiro; Aveiro; Portugal
has parent organization: Mar Institute of Medical Research Foundation
has parent organization: University of Aveiro; Aveiro; Portugal
European Union FP7 nlx_158456 SCR_004028 SciCrunch Registry Exploring and Understanding Adverse Drug Reactions by Integrative Mining of Clinical Records and Biomedical Knowledge 2026-10-31 12:13:43 9
Kyushu University; Fukuoka; Japan
 
Resource Report
Resource Website
1+ mentions
Kyushu University; Fukuoka; Japan (RRID:SCR_004149) university Japanese national university located in Fukuoka, in the island of Kyushu. is parent organization of: Signaling Pathway Database
is parent organization of: Kyushu University Definitive Haplotype Database
is parent organization of: ChIP-Atlas
nlx_23378, Wikidata:Q1188786, ISNI:0000 0001 2242 4849, grid.177174.3, Crossref funder ID:501100004096 https://ror.org/00p4k0j84 SCR_004149 SciCrunch Registry 2026-10-31 12:13:43 1
Hoosier Cancer Research Network
 
Resource Report
Resource Website
Hoosier Cancer Research Network (RRID:SCR_004026) HCRN nonprofit organization An independent nonprofit cancer research organization that provides full-service clinical trial management and support, from conception and study design through project completion and publication. Established to explore and develop leading edge cancer treatments across the United States and internationally, their clinical trials, developed in collaboration with academic and community oncologists, are conducted within a member network of more than 130 clinical research sites. Their vision and mission is to form unparalleled relationships between academic, community, pharmaceutical, and biotech partners with the goal of advancing cancer research, education, and patient advocacy. There are no costs to become a member. oncology, clinical trial, clinical is parent organization of: Big Ten Cancer Research Consortium Cancer nlx_158453, Wikidata: Q30287333, grid.428706.f https://ror.org/02mtpb511 SCR_004026 SciCrunch Registry Hoosier Oncology Group 2026-10-31 12:13:40 0
CCLG
 
Resource Report
Resource Website
10+ mentions
CCLG (RRID:SCR_004137) CCLG data or information resource, disease-related portal, portal, topical portal THIS RESORUCE IS NO LONGER IN SERVICE. Documented on April 27,2023. CCLG is an association of healthcare professionals involved in the treatment and care of children and younger teenagers with cancer, and underpins all the activity in pediatric oncology in the British Isles. CCLG is committed to research and development in the treatment of cancer in this age group, the ultimate goal of which is to maximize cure while minimizing the early and late side effects of treatment. Provision of information for patients and families is a core activity. The Children''s Cancer and Leukaemia Group was formed in 2006 as a result of the merger of the UK Children''s Cancer Study Group and the UK Childhood Leukaemia Working Party, both of which had been in existence since the 1970s. has parent organization: University of Leicester; Leicester; United Kingdom
is parent organization of: CCLG Tissue Bank
Cancer Research UK THIS RESORUCE IS NO LONGER IN SERVICE nlx_143573 SCR_004137 SciCrunch Registry Childrens Cancer and Leukaemia Group, Children''s Cancer and Leukemia Group, Childrens Cancer and Leukemia Group, Children''s Cancer and Leukaemia Group 2026-10-31 12:13:47 12
PENTA-ID
 
Resource Report
Resource Website
10+ mentions
PENTA-ID (RRID:SCR_004092) PENTA-ID clinical trial, data or information resource, disease-related portal, portal, topical portal, training resource A Level 1 network for pediatric infectious disease in Europe recognized by the European networks of paediatric research at the European Medicines Agency (EnprEMA) whose activities vary from clinical trials, to cohort studies and training. It is currently developing a portfolio of clinical trials in antimicrobials in children, including antibiotics, antivirals and antifungals. clinical trial, cohort study, pediatric, young human, child, antimicrobial, antibiotic, antiviral, antifungal is related to: EMIF HIV, Infectious disease, AIDS, Tuberculosis, Drug resistance European Union nlx_158553 SCR_004092 SciCrunch Registry PENTA Foundation, Fondazione PENTA, Fondazione PENTA - for the Treatment and Care of Children with HIV-ONLUS 2026-10-31 12:13:46 25
Korea University; Seoul; South Korea
 
Resource Report
Resource Website
1+ mentions
Korea University; Seoul; South Korea (RRID:SCR_004095) university Korea University is a private research university in Seoul, South Korea. Established in 1905, Korea University is one of the nation oldest and most prominent institutions of higher education. The student body consists of over 20,000 undergraduate students and over 10,000 graduate students. Korea University consists of the Seoul Campus, Sejong Campus and three auxiliary hospitals (Anam Hospital, Guro Hospital, Ansan Hospital). Institution, private, research, university, Seoul, South Korea is parent organization of: Infectious Disease Biomarker Database
is parent organization of: ISED- Influenza Sequence and Epitope Database
is parent organization of: Iterative dual-regression with sparse prior
is parent organization of: OpenBMI
nlx_91872 SCR_004095 SciCrunch Registry 2026-10-31 12:13:42 1
ZENODO
 
Resource Report
Resource Website
5000+ mentions
ZENODO (RRID:SCR_004129) ZENODO catalog, data or information resource, data repository, database, service resource, software repository, software resource, storage service resource Repository for all research outputs from across all fields of science in any file format as well as both positive and negative results. They assign all publicly available uploads a Digital Object Identifier (DOI) to make the upload easily and uniquely citeable. They further support harvesting of all content via the OAI-PMH protocol. They promote peer-reviewed openly accessible research, and curate uploads. ZENODO allows users to create their own collection and accept or reject all uploads to it. They allow for uploading under a multitude of different licenses and access levels. data set, software resource, video resource, audio track, image, poster, presentation, publication, digital preservation, digital archive, persistent identifier, digital object identifier, openaire orphan record repository is used by: NIH Heal Project
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is listed by: DataCite
is listed by: FAIRsharing
is related to: OpenAIRE
European Union FP7 OpenAIREplus 283595 DOI:10.5281, nlx_158614, DOI:10.17616/R3QP53, DOI:10.25504/FAIRsharing.wy4egf, r3d100011858 https://doi.org/10.17616/R3QP53, https://doi.org/10.17616/r3QP53, https://doi.org/10.5281/, https://dx.doi.org/10.5281/, https://fairsharing.org/10.25504/FAIRsharing.wy4egf, https://doi.org/10.17616/R35W56 SCR_004129 SciCrunch Registry Zenodo 2026-10-31 12:13:47 6074
GeneCommittee
 
Resource Report
Resource Website
GeneCommittee (RRID:SCR_004168) geneCommittee analysis service resource, data analysis service, production service resource, service resource, software resource Tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. While the user can work with different gene set collections and several microarray data files to configure specific classification experiments, the tool is able to run several tests in parallel. It is able to render valuable information for diagnostic analyses and clinical management decisions based on systematically evaluating custom hypothesis over different data sets using complementary classifiers, a key aspect in clinical research. dna, microarray, rna-seq, gene expression, classification, gene set, gene, gene set enrichment, functional annotation is listed by: OMICtools
has parent organization: University of Vigo; Galicia; Spain
PMID:24475928 Acknowledgement requested OMICS_02291 https://github.com/michada/GeneCommittee SCR_004168 SciCrunch Registry 2026-10-31 12:13:48 0
BC Cancer Agency
 
Resource Report
Resource Website
1+ mentions
BC Cancer Agency (RRID:SCR_004201) BCCA institution A portal that provides a province-wide, population-based cancer control program for the residents of British Columbia and the Yukon. The BC Cancer Agency''s mandate covers the spectrum of cancer care, from prevention and screening, to diagnosis, treatment, and through to rehabilitation. The BC Cancer Agency''s mandate is driven by a three-fold mission: 1. To reduce the incidence of cancer; 2. To reduce the mortality rate of people with cancer; 3. To improve the quality of life of people living with cancer. This mission drives everything we do, including providing screening, diagnosis and care, setting treatment standards, and conducting research into causes of, and cures for, cancer. The BC Cancer Agency operates five regional cancer centers, providing assessment and diagnostic services, chemotherapy, radiation therapy, and supportive care. Each of the BC Cancer Agency''s centers delivers cancer treatment based on provincial standards and guidelines established by the Agency. We work in partnership with communities to provide a network of chemotherapy clinics so patients can receive care closer to home. Research is an essential part of the BC Cancer Agency''s mission to not only find the causes of cancer, but to find better treatments for prolonged life and better quality of life. With direct links between the BC Cancer Agency''s physicians and researchers at our five centers, the Deeley Research Centre (located in Victoria) and the BC Cancer Agency''s Research Centre (located in Vancouver), we can quickly translate new discoveries into clinical applications. The BC Cancer Agency''s Research Centre includes eight specialty laboratories including the Genome Sciences Centre, and the Terry Fox Laboratory. The BC Cancer Foundation raises funds for cancer research and enhancements to care at the BC Cancer Agency. is related to: BC Cancer Foundation
is parent organization of: cisRED: cis-regulatory element
is parent organization of: British Columbia Gynaecologic Tissue Bank
is parent organization of: British Columbia Tumour Tissue Repository
is parent organization of: Spark
is parent organization of: ALEA
is parent organization of: APOLLOH
is parent organization of: British Columbia Breast Cancer Tumour Bank
is parent organization of: JointSNVMix
is parent organization of: mutationSeq
is parent organization of: Mouse Gene Expression at the BC Cancer Agency
is parent organization of: C. elegans Resources
is parent organization of: BCCA Cancer Drug Manual
is parent organization of: flowCL
is parent organization of: flowBin
Cancer BC Cancer Foundation ISNI: 0000 0001 0702 3000, Wikidata: Q4835275, grid.248762.d, nlx_143635, Crossref funder ID: 501100005614 https://ror.org/03sfybe47 SCR_004201 SciCrunch Registry British Columbia Cancer Agency 2026-10-31 12:13:45 3
WardWiki
 
Resource Report
Resource Website
WardWiki (RRID:SCR_004323) data or information resource, narrative resource, wiki Wardwiki is a wiki designed to give free advice to foundation doctors (also know as interns) to help with practical issues as they arise on hospital wards. Despite the proliferation of medical websites and expensive courses there remains a large gap in provision of practical, experience based guidance to help foundation doctors survive the first two years on the wards. You may search for topics of interest but there are also sections including Popular Topics, Popular Categories, Top 25 articles, and Featured article. It is the responsibility of each foundation doctor to ensure their actions, referrals and prescriptions are accurate. These pages are written and maintained to the best ability of the contributing authors. We encourage any contributions be well founded, accurate, in good faith, without endorsement of medical products or opinions, and not to breach existing copyright. WardWiki cannot accept liability for adverse events that may arise directly or indirectly from advice given. clinical medicine nlx_33631 SCR_004323 SciCrunch Registry WardWiki.com, WardWiki - Foundation Doctor Helper, WardWiki.com - Foundation Doctor Helper 2026-10-31 12:13:42 0
SeWeR - SEquence analysis using WEb Resources
 
Resource Report
Resource Website
SeWeR - SEquence analysis using WEb Resources (RRID:SCR_004167) data or information resource, portal, service resource, software resource, topical portal Sequence analysis using Web Resources (SeWeR) is an integrated, Dynamic HTML (DHTML) interface to commonly used bioinformatics services available on the World Wide Web. It is highly customizable, extendable, platform neutral, completely server-independent and can be hosted as a web page as well as being used as stand-alone software running within a web browser. It doesn''t require any server to host itself. The goal of SeWeR is to turn your web-browser into a powerful sequence-analysis tool. It is written entirely in JavaScript1.2. SeWeR can be downloaded and mirrored freely. The whole package is just around 300K. You can even run it from a floppy. SeWeR is not compatible with Netscape 6. SeWeR now generates graphics. Savvy is a plasmid drawing software that generates plasmid map in the revolutionary Scalable Vector Graphics format from W3C. nucleic acid, protein, pcr, alignment, sequence, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: Centre for Cellular and Molecular Biology; Hyderabad; India
PMID:11395442 biotools:sewer, nlx_18981 https://bio.tools/sewer SCR_004167 SciCrunch Registry SEquence analysis using WEb Resources, SeWeR 2026-10-31 12:13:45 0
Enrichr
 
Resource Report
Resource Website
5000+ mentions
Enrichr (RRID:SCR_001575) Enrichr analysis service resource, data analysis service, production service resource, service resource, software application, software resource A web-based gene list enrichment analysis tool that provides various types of visualization summaries of collective functions of gene lists. It includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to display enrichment results using the JavaScript library, Data Driven Documents (D3). The software can also be embedded into any tool that performs gene list analysis. System-wide profiling of genes and proteins in mammalian cells produce lists of differentially expressed genes / proteins that need to be further analyzed for their collective functions in order to extract new knowledge. Once unbiased lists of genes or proteins are generated from such experiments, these lists are used as input for computing enrichment with existing lists created from prior knowledge organized into gene-set libraries. bed, gene, software as a service, rna-seq, analyze, protein, function, gene list, visualization, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
PMID:23586463 Free, Freely available biotools:enrichr, SciRes_000171 https://bio.tools/enrichr SCR_001575 SciCrunch Registry 2026-10-31 12:12:53 5047
Drosophila anatomy and development ontologies
 
Resource Report
Resource Website
Drosophila anatomy and development ontologies (RRID:SCR_001607) FBbt controlled vocabulary, data or information resource, ontology A structured controlled vocabulary of the anatomy of Drosophila melanogaster. These ontologies are query-able reference sources for information on Drosophila anatomy and developmental stages. They also provide controlled vocabularies for use in annotation and classification of data related to Drosophila anatomy, such as gene expression, phenotype and images. They were originally developed by FlyBase, who continue to maintain them and have used them for over 200,000 annotations of phenotypes and expression. Extensive use of synonyms means that, given a suitably sophisticated autocomplete, users can find relevant content by searching with almost any anatomical term they find in the literature. These ontologies are developed in the web ontology language OWL2. Their extensive formalization in OWL can be used to drive sophisticated query systems. anatomy, development, developmental stage, gene expression, phenotype, owl is related to: OBO
is related to: Flannotator
is related to: REDfly Regulatory Element Database for Drosophilia
is related to: Bgee: dataBase for Gene Expression Evolution
has parent organization: FlyBase
has parent organization: SourceForge
NHGRI P41 HG000739 Free, Freely available nlx_153871 SCR_001607 SciCrunch Registry Drosophila anatomy & dev ontologies 2026-10-31 12:12:53 0
GlyTorsion
 
Resource Report
Resource Website
1+ mentions
GlyTorsion (RRID:SCR_001568) GlyTorsion analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource Service that performs a statistical analysis of carbohydrate torsion angles derived from the Protein Data Bank. Such as protein conformation can be described by the backbone torsion angles, a carbohydrate structure is mainly characterised by its linkage torsions. With the aid of pdb2linucs, a dataset of carbohydrate torsion angles was derived from from carbohydrate structures found in the PDB. This weekly updated dataset contains, besides linkage torsions, also ring torsions, omega torsions, N-acetyle group torsions and sidechain torsions of Asn residues involved in Glycan bonds. It can be queried by GlyTorsion. carbohydrate, torsion angle, torsion, angle, linkage torsion, ring torsion, omega torsion, n-acetyle group torsion, sidechain torsion, asn residue, glycan bond, statistical analysis is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: pdb2linucs
is related to: CARP
has parent organization: glycosciences.de
DFG PMID:15608187 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152881 SCR_001568 SciCrunch Registry GlyTorsion: Analysis of Carbohydrate Torsion Angles found in the Protein Data Bank (PDB) 2026-10-31 12:12:53 4
GlySeq
 
Resource Report
Resource Website
1+ mentions
GlySeq (RRID:SCR_001569) GlySeq analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource Service dedicated to statistically analyze the sequences around glycosylation sites. Glycosylation belongs to the most common and most important co- and postranslational modifications of proteins. Since it is often difficult to determine which potential glycosylation sites are in fact glycosylated, there is only few data available about glycoproteins. Sources from which such data can be retrieved are SwissProt and the Protein Data Bank (PDB). Data from the PDB is obtained using pdb2linucs and updated weekly. GlySeq is dedicated to statistically analyze these sequences, especially the areas around glycosylation sites. sequence, glycosylation site, glycoprotein sequence, glycoprotein, carbohydrate is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: pdb2linucs
has parent organization: glycosciences.de
DFG PMID:15608187 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152882 SCR_001569 SciCrunch Registry GlySeq - Statistical Analysis of Glycoprotein Sequences 2026-10-31 12:12:53 1
The Biomedical Research Foundation - Current Research
 
Resource Report
Resource Website
The Biomedical Research Foundation - Current Research (RRID:SCR_001564) data or information resource, portal, topical portal THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This laboratory facilities contain core research space for monoclonal antibody production, oligonucleotide and peptide synthesis, gene cloning, DNA sequencing, high performance liquid chromatography, tissue culture, positron emission tomography, magnetic resonance spectroscopy and electron microscopy. drug, electron microscopy, - flow cytometry, gene, abuse, alcohol, automated cell imaging, cancer, cloning, confocal and digital microscopy, dna, dna gene chip analysis, immunology, inflammation, ischemic disorder, liquid chromatography, magnetic resonance spectroscopy, mass spectrometry, monoclonal antibody production, neuroscience, oligonucleotide, peptide, polymerase chain reaction (pcr), positron emission tomography, sequencing, signal transduction, synthesis, tissue culture THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10446 http://www.biomed.org/home http://www.biomed.org/bio_med_research.cfm SCR_001564 SciCrunch Registry BRI Research 2026-10-31 12:12:53 0
Neural Maestro
 
Resource Report
Resource Website
Neural Maestro (RRID:SCR_001563) Neural Maestro data access protocol, software application, software library, software resource, software toolkit, web service THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. A C#.NET/C++.NET 4.0 API multi-threaded, parallel class library with CUDA kernels for EEG predictive analytics gleaned from the ModelMaker 2 application. This web service and component library offers functionality to do univariate and multivariate nonlinear time series and frequency based predictive analysis for EEG / Ecog / MEG signals for gaming applications. Neural Maestro works with both EEGLab / BCILab and eConnectome as well as other MATLAB and R packages. It enables one to build highly sophisticated neuroscience applications with little effort in Windows applications. univariate, multivariate, nonlinear time series, time series, frequency, predictive analysis, eeg, ecog, meg, gaming application, neuroscience, computer gaming, modeling, forecasting, matlab, r, artificial intelligence, analytics, neural assessment is related to: EEGLAB
is related to: Neural Cipher
is related to: BCILAB
is related to: ModelMaker
is related to: iBIOFind
has parent organization: The Cromwell Workshop
THIS RESOURCE IS NO LONGER IN SERVICE nlx_153440 SCR_001563 SciCrunch Registry 2026-10-31 12:12:53 0

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