Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Keywords:sequence (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

570 Results - per page

Show More Columns | Download 570 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
DREME
 
Resource Report
Resource Website
10+ mentions
DREME (RRID:SCR_016860) analysis service resource, data analysis service, production service resource, service resource Software tool to discover short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in sequences compared with shuffled sequences or control sequences (sample output from sequences). discover, short, ungapped, motif, sequence, compare, shuffled, control, sample, output, recurring, fixed, length, pattern, data is listed by: MEME Suite - Motif-based sequence analysis tools Free, Available for download, Freely avaialble SCR_016860 Discriminative Regular Expression Motif Elicitation, DREME 2026-09-05 06:32:14 23
STRING
 
Resource Report
Resource Website
10000+ mentions
STRING (RRID:SCR_005223) STRING data or information resource, database Database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations and are derived from four sources: Genomic Context, High-throughput experiments, (Conserved) Coexpression, and previous knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable. The database currently covers 5''214''234 proteins from 1133 organisms. (2013) protein association, protein functional association, protein interaction, protein-protein interaction, protein, sequence, protein sequence, interaction, gene, FASEB list is used by: MobiDB
is used by: PAXdb
is listed by: Nuclear Receptor Signaling Atlas
is listed by: NIDDK Information Network (dkNET)
is related to: Biomine
is related to: PSICQUIC Registry
is related to: ShinyGO
has parent organization: European Molecular Biology Laboratory
has plug in: Cytoscape StringApp
BMBF ;
European Union FP6 ;
EMBO ;
ProBioC ;
Swiss Institute of Bioinformatics
PMID:23203871
PMID:21045058
PMID:18940858
PMID:17098935
PMID:15608232
PMID:12519996
nif-0000-03503, r3d100010604 https://doi.org/10.17616/R3VS40 SCR_005223 Search Tool for the Retrieval of Interacting Genes/Proteins, STRING - Known and Predicted Protein-Protein Interactions 2026-09-05 06:31:28 32678
MIPModDB
 
Resource Report
Resource Website
1+ mentions
MIPModDB (RRID:SCR_006058) MIPModDB data or information resource, database This is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins. The nearly completed sets of MIPs have been identified from the completed genome sequence of organisms available at NCBI. The structural models of MIP proteins were created by defined protocol. The database aims to provide key information of MIPs in particular based on sequence as well as structures. This will further help to decipher the function of uncharacterized MIPs. For each MIP entry, this database contains information about the source, gene structure, sequence features, substitutions in the conserved NPA motifs, structural model, the residues forming the selectivity filter and channel radius profile. For selected set of MIPs, it is possible to derive structure-based sequence alignment and evolutionary relationship. Sequences and structures of selected MIPs can be downloaded from MIPModDB database. major intrinsic protein, model, protein structure, structural model, sequence, structure, superfamily, genome sequence, amino acid sequence, motif, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: Indian Institute of Technology Kanpur; Uttar Pradesh; India
Government of India PMID:22080560 Free nlx_151460, biotools:mipmoddb https://bio.tools/mipmoddb SCR_006058 Major Intrinsic Protein superfamily Models, MIPModDB - Major Intrinsic Protein superfamily Models 2026-09-05 06:31:33 6
ProRepeat
 
Resource Report
Resource Website
1+ mentions
ProRepeat (RRID:SCR_006113) ProRepeat data or information resource, database ProRepeat is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats. ProRepeat collects repeats from all proteins included in the UniProt knowledgebase, together with 85 completely sequenced eukaryotic proteomes contained within the RefSeq collection. It contains non-redundant perfect tandem repeats, approximate tandem repeats and simple, low-complexity sequences, covering the majority of the amino acid tandem repeat patterns found in proteins. The ProRepeat web interface allows querying the repeat database using repeat characteristics like repeat unit and length, number of repetitions of the repeat unit and position of the repeat in the protein. Users can also search for repeats by the characteristics of repeat containing proteins, such as entry ID, protein description, sequence length, gene name and taxon. ProRepeat offers powerful analysis tools for finding biological interesting properties of repeats, such as the strong position bias of leucine repeats in the N-terminus of eukaryotic protein sequences, the differences of repeat abundance among proteomes, the functional classification of repeat containing proteins and GC content constrains of repeats' corresponding codons. amino acid, tandem, repeat, protein, sequence, nucleotide sequence, repeat fragment, protein repeat, proteome, sequence length, gene, taxon, bio.tools is listed by: Debian
is listed by: bio.tools
is related to: UniProtKB
is related to: RefSeq
has parent organization: Wageningen University and Research Centre; Gelderland; Netherlands
PMID:22102581 nlx_151587, biotools:prorepeat https://bio.tools/prorepeat SCR_006113 2026-09-05 06:31:33 1
ProOpDB
 
Resource Report
Resource Website
10+ mentions
ProOpDB (RRID:SCR_006111) ProOpDB data or information resource, database The Prokaryotic Operon DataBase (ProOpDB) constitutes one of the most precise and complete repository of operon predictions in our days. Using our novel and highly accurate operon algorithm, we have predicted the operon structures of more than 1,200 prokaryotic genomes. ProOpDB offers diverse alternatives by which a set of operon predictions can be retrieved including: i) organism name, ii) metabolic pathways, as defined by the KEGG database, iii) gene orthology, as defined by the COG database, iv) conserved protein motifs, as defined by the Pfam database, v) reference gene, vi) reference operon, among others. In order to limit the operon output to non-redundant organisms, ProOpDB offers an efficient protocol to select the more representative organisms based on a precompiled phylogenetic distances matrix. In addition, the ProOpDB operon predictions are used directly as the input data of our Gene Context Tool (GeConT) to visualize their genomic context and retrieve the sequence of their corresponding 5�� regulatory regions, as well as the nucleotide or amino acid sequences of their genes. The prediction algorithm The algorithm is a multilayer perceptron neural network (MLP) classifier, that used as input the intergenic distances of contiguous genes and the functional relationship scores of the STRING database between the different groups of orthologous proteins, as defined in the COG database. Nevertheless, the operon prediction of our method is not restricted to only those genes with a COG assignation, since we successfully defined new groups of orthologous genes and obtained, by extrapolation, a set of equivalent STRING-like scores based on conserved gene pairs on different genomes. Since the STRING functional relationships scores are determined in an un-bias manner and efficiently integrates a large amount of information coming from different sources and kind of evidences, the prediction made by our MLP are considerably less influenced by the bias imposed in the training procedure using one specific organism. genome, operon, gene pair, gene, operon prediction, metabolic pathway, gene orthology, conserved protein motif, protein motif, reference gene, reference operon, visualization, regulatory region, nucleotide, amino acid, sequence, phylogeny, FASEB list is related to: COG
is related to: KEGG
is related to: Pfam
has parent organization: National Autonomous University of Mexico; Mexico City; Mexico
CONACyT 60127-Q;
CONACyT SALUD-2007-C01-68992;
DGAPA IN212708
PMID:20385580 nlx_151585 SCR_006111 Prokaryotic Operon DataBase (ProOpDB), Prokaryotic Operon DataBase 2026-09-05 06:31:33 35
PRED-CLASS
 
Resource Report
Resource Website
PRED-CLASS (RRID:SCR_006216) PRED-CLASS analysis service resource, data analysis service, production service resource, service resource A system of cascading neural networks that classifies any protein, given its amino acid sequence alone, into one of four possible classes: membrane, globular, fibrous, mixed. classification, protein, fibrous, globular, protein class, membrane, sequence, algorithm, protein classification, neural network, transmembrane, genome annotation, genome-wide analysis is related to: DAM-Bio
has parent organization: University of Athens Biophysics and Bioinformatics Laboratory
European Union ERBFMRXCT960019 PMID:11455609 nlx_151762 SCR_006216 PRED-CLASS - Classification of proteins into one of four possible classes 2026-09-05 06:31:34 0
SILVA
 
Resource Report
Resource Website
10000+ mentions
SILVA (RRID:SCR_006423) data or information resource, database High quality ribosomal RNA databases providing comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya). Supplementary services include a rRNA gene aligner, online tools for probe and primer evaluation and optimized browsing, searching and downloading on the website. The extensively curated SILVA taxonomy and the new non-redundant SILVA datasets provide an ideal reference for high-throughput classification of data from next-generation sequencing approaches. Alignment tool, SINA, is available for download as well as available for use online. ribosomal rna, gene sequence, gene, sequence, alignment, taxonomy, 16s, 18s, 23s, 28s, phylogeny, probe, primer, alignment service, fish, arb, ribocon, geoblast, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is affiliated with: RNAcentral
is related to: ARB project
is related to: SINA
is related to: European ribosomal RNA database
has parent organization: German Collection of Microorganisms and Cell Cultures
German Collection of Microorganisms and Cell Cultures PMID:23193283
PMID:24293649
PMID:17947321
biotools:silva, OMICS_01514, nif-0000-03464, r3d100011323, rid_000103 https://bio.tools/silva, https://doi.org/10.17616/R3FP60 SCR_006423 SILVA rRNA database, SILVA - high quality ribosomal RNA databases 2026-09-05 06:31:35 15971
ViralZone
 
Resource Report
Resource Website
100+ mentions
ViralZone (RRID:SCR_006563) ViralZone data or information resource, database ViralZone is a SIB Swiss Institute of Bioinformatics web-resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB/Swiss-Prot viral protein entries. ViralZone project is handled by the virus program of SwissProt group. Proteins popups were developed in collaboration with Prof. Christian von Mering and Andrea Franceschini, Bioinformatics Group , Institute of Molecular Life Sciences, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland, funded in part by the SIB Swiss Institute of bioinformatics. All pictures in ViralZone are copyright of the SIB Swiss Institute of Bioinformatics. dna virus, rna virus, virus, dna, rna, genomic, proteomic, sequence, reference strain, image, virion, retro-transcribing virus, genome, bibliographic, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: SIB Swiss Institute of Bioinformatics
Swiss Institute of Bioinformatics PMID:20947564 biotools:viralzone, r3d100013314, nlx_144372 https://bio.tools/viralzone, https://doi.org/10.17616/R31NJMRM http://www.expasy.org/viralzone/ SCR_006563 Viral Zone 2026-09-05 06:31:35 148
Yeast Intron Database
 
Resource Report
Resource Website
1+ mentions
Yeast Intron Database (RRID:SCR_007144) Yeast Intron Database data or information resource, database Database of information about the spliceosomal introns of the yeast Saccharomyces cerevisiae. Listed are known spliceosomal introns in the yeast genome and the splice sites actually used are documented. Through the use of microarrays designed to monitor splicing, they are beginning to identify and analyze splice site context in terms of the nature and activities of the trans-acting factors that mediate splice site recognition. In version 3.0, expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors is included. These data are displayed on each intron page for browsing and can be downloaded for other types of analysis. intron, spliceosomal, splicing, genome, intron splice signal, sequence, splice site is listed by: OMICtools
has parent organization: University of California at Santa Cruz; California; USA
W. M. Keck Foundation ;
Packard Foundation ;
NIH
PMID:11988574 The community can contribute to this resource nif-0000-03649, OMICS_01890 http://www.cse.ucsc.edu/research/compbio/yeast_introns.html SCR_007144 Ares lab Yeast Intron Database 2026-09-05 06:31:38 2
ProbeExplorer
 
Resource Report
Resource Website
ProbeExplorer (RRID:SCR_007116) ProbeExplorer analysis service resource, data analysis service, production service resource, service resource Probe Explorer is an open access web-based bioinformatics application designed to show the association between microarray oligonucleotide probes and transcripts in the genomic context, but flexible enough to serve as a simplified genome and transcriptome browser. Coordinates and sequences of the genomic entities (loci, exons, transcripts), including vector graphics outputs, are provided for fifteen metazoa organisms and two yeasts. Alignment tools are used to built the associations between Affymetrix microarrays probe sequences and the transcriptomes (for human, mouse, rat and yeasts). Search by keywords is available and user searches and alignments on the genomes can also be done using any DNA or protein sequence query. Platform: Online tool bioinformatics, microarray, oligonucleotide probe, transcript, genomic, genome, transcriptome, alignment, affymetrix, probe sequence, dna, protein, sequence, statistical analysis is listed by: Gene Ontology Tools
is related to: Gene Ontology
has parent organization: University of Salamanca; Salamanca; Spain
Open unspecified license - Free for academic use nlx_149275 SCR_007116 Probe Explorer 2026-09-05 06:31:38 0
Tetraodon nigroviridis Database
 
Resource Report
Resource Website
Tetraodon nigroviridis Database (RRID:SCR_007123) data or information resource, database This database have been funded by the National Human Genome Research Institute (NHGRI) to produce shotgun sequence of the Tetraodon nigriviridis genome. The strategy involves Whole Genome Shotgun (WGS) sequencing, in which sequence from the entire genome is generated. Whole genome shotgun libraries were prepared from Tetraodon genomic DNA obtained from the laboratory of Jean Weissenbach at Genoscope. Additional sequence data of approximately 2.5X coverage of Tetraodon has also been generated by Genoscope in plasmid and BAC end reads. Broad and Genoscope intend to pool their data and generate whole genome assemblies. Tetraodon nigroviridis is a freshwater pufferfish of the order Tetraodontiformes and lives in the rivers and estuaries of Indonesia, Malaysia and India. This species is 20-30 million years distant from Fugu rubripes, a marine pufferfish from the same family. The gene repertoire of T. nigroviridis is very similar to that of other vertebrates. However, its relatively small genome of 385 Mb is eight times more compact than that of human, mostly because intergenic and intronic sequences are reduced in size compared to other vertebrate genomes. These genome characteristics along with the large evolutionary distance between bony fish and mammals make Tetraodon a compact vertebrate reference genome - a powerful tool for comparative genetics and for quick and reliable identification of human genes. estruary, evolutionary, fish, freshwater, fugu rubripes, gene, genetic, bac, bony, distance, dna, genome, genomic, human, intergenic, intronic, nigriviridis, plasmid, pufferfish, river, sequence, sequencing, shotgun, specie, tetraodon, tetraodontiformes, vertebrate nif-0000-20998 SCR_007123 TND 2026-09-05 06:31:38 0
Protein Classification Benchmark Collection
 
Resource Report
Resource Website
10+ mentions
Protein Classification Benchmark Collection (RRID:SCR_007561) data or information resource, database It was created in order to create standard datasets on which the performance of machine learning methods can be compared. The collection contains datasets of sequences and structures, each subdivided into positive/negative training/test sets. Such a subdivision is called a classification task. Typical tasks include the classification of structural domains in the SCOP and CATH databases based on their sequences, as fell as various functional and taxonomic classification tasks. Running a performance evaluation test on an entire database can include many different classification tasks. These ensembles of classification tasks are encoded in a simple matrix format - called the cast matrix or membership table - that specifies the role of each sequence (or structure) in the different calculations. Each column of this matrix is a subdivision of the objects (rows) into positive/negative training/test sets. Typically, a database record contains such an ensemble of classification tasks, encoded in a single cast matrix. In addition, there is a collection of distance matrices that contain an all vs. all comparison of the datasets using methods as BLAST, Smith-Waterman, 3D-comparisons etc. Evaluation of a method on a given database consists of calculating a performance measure such as a receiver operating curve (ROC) AUC value. Results of evaluation are deposited along with the data, each dataset is evaluated at least by one classification method, such as 1NN (nearest neighbour) or SVM (support vector machines), ANN (artificial neural networks), RF (random forests) etc.. There are small datasets meant for program developers, as well as downloadable programs for various classification algorithms. classificaiton, machine learning, sequence, standard, standard dataset, structure, technology nif-0000-02600 SCR_007561 Benchmark 2026-09-05 06:31:40 26
CMKB
 
Resource Report
Resource Website
1+ mentions
CMKB (RRID:SCR_007229) CMKB data or information resource, database It is a database of keys facts about proteins, families, and complexes involved in cell migration. This ongoing project provides a large amount of automated and curated data, collected from numerous online resources that are updated monthly. These data include names, synonyms, sequence information, summaries, CMC research data, reagents, structures, as well as protein family and complex details. CMKB''s ultimate goal is to create a database that will enable the cell migration community to conveniently access significant information about molecules of interest. This will also serve as a stepping stone to pathway analysis and demonstrate how these molecules coordinate with one another during cell adhesion and movement. Sponsors: This resource is supported by the Cell Migration Consortium. cell, migration, knowledgebase, database, protein, family, data, sequence, synonyms, research, reagent, structure, protein, molecule, interest, pathway, adhesion, movement nif-0000-30312 SCR_007229 Cell Migration Knowledgebase, The Cell Migration Knowledgebase 2026-09-05 06:31:39 1
rSeq
 
Resource Report
Resource Website
1+ mentions
rSeq (RRID:SCR_000562) software resource, software toolkit, source code A software toolkit for RNA sequence data analysis. It contains programs that cover several aspects of RNA-Seq data analysis such as read quality assessment, reference sequence generation, sequence mapping, and gene and isoform expressions estimations. rna, sequence, read quality assessment, reference sequence generation, sequence mapping, gene, isoform expressions estimations, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of Michigan; Ann Arbor; USA
Free, Available for download, Freely available, OMICS_01288, biotools:rseq https://bio.tools/rseq SCR_000562 RNA-Seq Analyzer, rSeq: RNA-Seq Analyzer 2026-09-05 06:31:10 4
GlycoFragment
 
Resource Report
Resource Website
1+ mentions
GlycoFragment (RRID:SCR_001573) GlycoFragment analysis service resource, data analysis service, production service resource, service resource Service that calculates and displays the main fragments (Band C-, Z- and Y-, A- and X-ions) of oligosaccharides that should occur in MS-spectra. The extended ASCII nomenclature as recommended by IUPAC is used to input the sequence of complex oligosaccharides. However, some additional input rules have to be fulfilled. In case only the topology and composition of the oligosaccharide is known, a simpler way to input carbohydrate sequences is possible. Since the hydroxyl groups of synthetic carbohydrates are often the are protected they have included a way to indicate if sugar residue are persubstituted. Please have a look at the examples of valid input structures. fragment, mass spectrometry, carbohydrate, sequence, oligosaccharide, mass spectrometry-spectra, structure, ion has parent organization: glycosciences.de THIS RESOURCE IS NO LONGER IN SERVICE nlx_152886 SCR_001573 GlycoFragments, Sugar Fragmentation 2026-09-05 06:31:14 1
DictyOGlyc
 
Resource Report
Resource Website
10+ mentions
DictyOGlyc (RRID:SCR_001600) DictyOGlyc analysis service resource, data analysis service, production service resource, service resource Server that produces neural network predictions for GlcNAc O-glycosylation sites in Dictyostelium discoideum proteins. glcnac glycosylation site, neural network, o-glycosylation, prediction, proteome, glycoprotein, glcnac, sequence, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: CBS Prediction Servers
Deutscher Akademischer Austauschdienst ;
HspII/AUFE ;
Macquarie University International Postgraduate Research Award ;
Australian Research Council ;
National Health and MRC ;
Danish National Research Foundation
PMID:10521537 Free, Freely available nlx_153856, biotools:dictyoglyc https://bio.tools/dictyoglyc SCR_001600 2026-09-05 06:31:14 17
SSCprofiler
 
Resource Report
Resource Website
1+ mentions
SSCprofiler (RRID:SCR_001282) SSCprofiler analysis service resource, data analysis service, production service resource, service resource Tool which can be used to identify novel miRNA gene candidates in the human genome. microrna, gene, genome, sequence, structure, conservation is listed by: OMICtools
has parent organization: Institute of Molecular Biology and Biotechnology; Heraklion; Greece
PMID:19324892 Free, Freely available OMICS_02055 SCR_001282 Sequence Structure and Conservation profiler 2026-09-05 06:31:13 5
ArkDB - Genomes For The Rest of Us
 
Resource Report
Resource Website
10+ mentions
ArkDB - Genomes For The Rest of Us (RRID:SCR_001838) data or information resource, database The ArkDB database system aims to provide a comprehensive public repository for genome mapping data from farmed and other animal Species. The system also aims to provide a route in to genomic and other sequence from the initial viewpoint of linkage mapping, RH mapping, physical mapping or - possibly more importantly - QTL mapping data. Sponsors: ArkDB is funded by Biotechnology and Biological Sciences Research Council (BBSRC), UK. Cat, Chicken, Cow, Deer, Duck, Horse, Pig, Quail, Salmon, Sea Bass, Sheep, Turkey, QLT map, Linkage map, RH map, Farm animal, Genome map, Sequence, Mapping duck, farm animal, cat, chicken, cow, deer, genome map, horse, linkage map, mapping, model organism comparative genomic, pig, qlt map, quail, rh map, salmon, sea bass, sequence, sheep, turkey has parent organization: Roslin Institute PMID:11125062 Free, Freely available nif-0000-02568, r3d100012788 SCR_001838 ArkDB 2026-09-05 06:31:15 22
Genome Network Platform
 
Resource Report
Resource Website
10+ mentions
Genome Network Platform (RRID:SCR_001737) GNP data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Integrated database of experiment data generated by participating research institutes and public databases relating to: 1) transcription starting position of human genes in the human genome, 2) conjunction to control region on transcriptional factors and the human genome 3) protein-protein interaction with a central focus on transcription factors organized for use in genome level research. Gene Search is the function to search the integrated database by using keywords and public IDs. The search results can be visualized by: * Genome Explorer : provides annotation of landmarks (genes, transcription start sites, etc.) aligned in accordance with their genome locations. * PPI Network : provides a graphical view of protein-protein interaction (PPI) network from the experimental data generated under the project and the public datasets. * Expression Profile : clusters genes by expression pattern and display the result with heatmap. The function provides genes which have relation of coregulation and anti-coregulation. * Comparison Viewer : This function gives the view to compare the genomic regions between human and mouse homologous genes. The viewer shows the distribution of transcription start sites (TSS) as the way of separable by tissues or time points with other landmarks on genome region. * Gene Stock : This is the function to save the gene list that you are interested until the session is closed. gene, genome, chip, human, interaction, micro array, protein, protein-protein interaction, qrt-pcr, rat, rna, sequence, short rna, tiling array, transcription, transcription control, transcription factor, transcription starting position, yeast two hybrid, data set, cage, data analysis service is listed by: 3DVC
has parent organization: National Institute of Genetics; Shizuoka; Japan
PMID:24927841 Free, Freely Available nif-0000-10237 http://genomenetwork.nig.ac.jp/index_e.html SCR_001737 2026-09-05 06:31:15 20
AutoPSI database of predicted SCOP classifications
 
Resource Report
Resource Website
AutoPSI database of predicted SCOP classifications (RRID:SCR_001923) data or information resource, database Searchable database for predicted protein sequences and structures. It has the ability to search through PDB ID, UniProt ID, and descriptive classifiers. protein, structure, sequence, database, search, uniprot has parent organization: Ludwig-Maximilians-University; Munich; Germany Ludwig Maximilians Universitat Munchen PMID:17932066 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-02588 SCR_001923 Automated Protein Structure Identification (AutoPSI) database, AutoPSI, AutoPSI Database, Automated Protein Structure Identification database 2026-09-05 06:31:15 0

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. Kravitz Dataset1 Resources

    Welcome to the Kravitz Resources search. From here you can search through a compilation of resources used by Kravitz and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that Kravitz has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on Kravitz then you can log in from here to get additional features in Kravitz such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into Kravitz you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.