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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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CTSpedia Resource Report Resource Website |
CTSpedia (RRID:SCR_008733) | CTSpedia | data or information resource, knowledge environment, knowledgebase, narrative resource, software resource, training material, wiki | CTSpedia is a national effort to collect wisdom, tools, educational materials, and other items useful for clinical and translational researchers and to provide timely and useful advice to clinical and translational researchers with specific problems. The CTSpedia is a collaborative vehicle for the CTSA''s Biostatistics/Epidemiology/Research/Design (BERD) Online Resources and Education taskforce to identify and share resources across the national consortium and community researchers world-wide. With the support of the national BERD consortia, the project obtained funding and support from the National Center for Research Resources (NCRR) to expand the original scope and content of CTSpedia and foster collaboration amongst CTSAs. The main goal of CTSpedia.org is to create a definable academic home on the internet for the discipline of clinical and translational sciences across the country and the world. * While the CTSA consortium serves the onsite physical level of the institutions involved, CTSpedia.org seeks to fill the gaps where the network is lacking, and to augment that network as the central hub for the peer to peer sharing of knowledge and resources. * While the CTSA national scope comes to fruition, the international scope of the consortia is more readily facilitated with an online resource like CTSpedia. * Utilizing the collaborative nature of the wiki-style website, CTSpedia.org allows for researchers anywhere in the world to ask questions and receive answers and related information in a timely and efficient manner, overcoming the logistical issues of distance and scheduling. * The streamlined availability of an online resource and knowledge repository will aid in addressing common issues that arise in clinical research, which will filter out consultation requests for minor questions, allowing for CTSA consultants to address more prevalent consultations. | clinical research, translational research, statistical tool, statistical graphic, presentation, graphic, discussion forum, dataset, ctsa, biostatistics |
has parent organization: University of California at San Francisco; California; USA has parent organization: University of Rochester; New York; USA has parent organization: University of California at Davis; California; USA has parent organization: Vanderbilt University; Tennessee; USA |
NCRR RR024146 | nlx_143799 | SCR_008733 | CTSpedia: A Knowledge Base for Clinical and Translational Research, CTSpedia.org | 2026-09-05 06:26:27 | 0 | |||||||
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Braintelemetry Resource Report Resource Website 1+ mentions |
Braintelemetry (RRID:SCR_008607) | software resource | The LVC64 accepts 64 microvolt-level buffered input signals from headstage preamps and serves as a 24-bit recording device. It is connected to a PC with an USB2.0 cable and provides a complete digital system to record broadband bioelectric signals. It has two parts such as a 64-channel ADC unit and a digital interface & power supply unit. Between these units there is a slip ring commutator and a DC motor. The main features of the LVC system include: Up to 128 Analog inputs per system; Each Analog input is sampled with an individual 24 bit delta-sigma A/D converter Analog inputs are simultaneously sampled at 1750 to 32000 samples per second In addition to multiple unit activity - the EEG, field potentials and behavioral marker signals are recorded simultaneously in the same file Full scale analog input range is 5 millivolts RMS (14 mV peak-to-peak) Analog inputs are differential inputs Extremely low input referred noise levels of max. 8 uV peak-to-peak Direct headstage tether and tether extension cable inputs Slip ring commutator for un-twisting the twisted tether cable Headstage power supplies Up to 24 bit TTL compatible Parallel Input Port for monitoring external signals and external Timestamp Clock input and output for multiple system synchronization Totally electrically isolated system from AC Power and Ground ''Microvolts-to-harddisk dumper'' data acquisition program running in host PC (32-bit MS Window XP) Online display of records during data acquisition in Host PC''s monitor Offline spike sorting by Cooperative Linux software of the Host PC | nif-0000-31947 | SCR_008607 | Braintelemetry | 2026-09-05 06:26:25 | 2 | |||||||||||
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BrainVoyager: Talairach Brain Atlas Resource Report Resource Website |
BrainVoyager: Talairach Brain Atlas (RRID:SCR_008800) | BV Talairach Brain Atlas | atlas, data or information resource, data processing software, data visualization software, reference atlas, software application, software resource, talairach-tournoux atlas | The Talairach brain atlas visualized via BrainVoyager (Commercial software) can be used to visualize Brodmann areas as they were defined for the Talairach brain (Talairach & Tournaux, 1988) and to compare regions of subjects with respect to the Brodmann areas. The demarcated areas are based on the Talairach demon, which is a digitized version of the Talairach atlas and which has been transferred into BrainVoyager VOI files by Matthias Ruf, Mannheim. Using the Brodman.voi file you may ask questions like the following: What is the signal time course of subject N in experiment A within Brodmann area X ?. Note, however, that the defined areal boundaries should be used only as a rough guideline for determining the location of activated regions: There is substantial variation of histologically defined areas between subjects. Since cytoarchitectonically defined Brodmann areas are not available in vivo, we advise to use the provided information with care. The TalairachBrain.vmr file is located in the same folder as your BrainVoyager executable file. It can be loaded as any VMR project by using the Open... item in the File menu (or the Open icon). The TalairachBrain.vmr file is also loaded automatically when using the glass brain visualization tool. | brodmann partition scheme, cerebral cortex, human, brain, talairach | has parent organization: BrainVoyager | nlx_144323 | SCR_008800 | 2026-09-05 06:26:28 | 0 | |||||||||
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MoonProt Resource Report Resource Website 10+ mentions |
MoonProt (RRID:SCR_008803) | data or information resource, laboratory portal, organization portal, portal | The moonlighting protein database is not yet available publicly. Stay tuned. Moonlighting proteins have multiple, seemingly unrelated functions not due to gene fusions or alternative splicing. Like PGI, which is a cytosolic enzyme and an extracellular cytokine, dozens of other proteins have been found to moonlight. Connie coined the term moonlighting proteins and has written several review articles that develop the idea of moonlighting proteins and describe additional moonlighting proteins from the literature, how they switch between functions, how they might have evolved, and how they might benefit the cell. She is currently writing two additional invited articles and planning computational studies of the sequences and structures of known moonlighting proteins. | protein, multifunctional protein, double functional protein, protein database | has parent organization: University of Illinois at Chicago; Illinois; USA | PMID:12902157 | nlx_144357 | SCR_008803 | Moonlighting proteins database | 2026-09-05 06:26:28 | 27 | ||||||||
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Taub Institute for Research on Alzheimers Disease and the Aging Brain Resource Report Resource Website |
Taub Institute for Research on Alzheimers Disease and the Aging Brain (RRID:SCR_008802) | biomaterial supply resource, brain bank, material resource, tissue bank | An institute which conducts research of Alzheimer's, Parkinson's and other age-related brain diseases. This organization also provides clinical evaluations to patients with memory problems, Alzheimer's disease or other types of dementia. Furthermore, the institute leads multi-center clinical trials for the treatment and prevention of Alzheimer's, Parkinson's and other age-related brain diseases. There is a brain donation program for enrolled/examined patients. The Education Core of the Taub Institute sponsors community events and Continuing Medical Education programs, as well as the distribution of periodic newsletters and brochures highlighting research developments and other Alzheimer's topics. | alzheimer's disease, parkinson's disease, age-related brain disease, neurodegenerative disease, late adult human, frontotemporal lobar degeneration, lewy body dementia, vascular disease, metabolic disease, geriatric psychiatry, normal aging, autopsy, brain tissue, brain, tissue, imaging, clinical trial, cell biology, neuroscience, cognitive neuroscience |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Columbia University; New York; USA |
Alzheimer's disease, Parkinson's disease, Age-related brain disease, Neurodegenerative disease, Frontotemporal lobar degeneration, Lewy body dementia, Vascular disease, Metabolic disease, Aging | NIA ; Taub Family Foundation |
nlx_144343 | SCR_008802 | Taub Institute ADRC, Taub Center for Alzheimer's Disease Research, Taub Institute Alzheimer's Disease Research Center, Taub Institute for Research on Alzheimer’s Disease | 2026-09-05 06:26:28 | 0 | |||||||
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Massachusetts Alzheimer's Disease Research Center Resource Report Resource Website 1+ mentions |
Massachusetts Alzheimer's Disease Research Center (RRID:SCR_008764) | MADRC, ADRC | biomaterial supply resource, brain bank, material resource, tissue bank | An Alzheimer's disease research center which supports new research and enhances ongoing research by providing core support to bringing together behavioral, biomedical, and clinical scientists. The Center conducts multidisciplinary research, trains scientists, and spreads information about Alzheimer's disease and related disorders to the general public. The principal goal of the Massachusetts ADRC is to support research in aging, Alzheimer's Disease and other related disorders. Researchers work with national and international multi-disciplinary teams to understand: normal aging, the transition from normal aging to mild forms of memory problems, and the later stages of dementia. The Massachusetts ADRC has an active brain donation program at the Massachusetts General Hospital (MGH) for patients as well as subjects enrolled in research studies. | brain, tissue, healthy control, alzheimer's disease, neurological disease, parkinson's disease, frontotemporal dementia, dementia with lewy bodies, dementia, neurodegenerative disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Harvard Medical School; Massachusetts; USA |
Aging, Alzheimer's disease, Neurological disease, Parkinson's disease, Frontotemporal dementia, Pick's disease, Primary Progressive Aphasia, Dementia with Lewy bodies, Dementia, Progressive Supranuclear Palsy, Corticobasal Degeneration, Vascular dementia, Cerebral Amyloid Angiopathy, Dementia pugilistica, Boxer's Syndrome, Neurodegenerative disease | U.S. Department of Health and Human Services ; NIA |
Public, Available to the research community | nlx_144104 | SCR_008764 | Massachusetts ADRC, Massachusetts Alzheimer's Disease Research Center | 2026-09-05 06:26:28 | 1 | |||||
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Aniara Resource Report Resource Website 1+ mentions |
Aniara (RRID:SCR_008885) | commercial organization | An Antibody supplier | nlx_152272 | SCR_008885 | Aniara Co | 2026-09-05 06:26:30 | 1 | |||||||||||
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Rush Alzheimer's Disease Center Resource Report Resource Website 1+ mentions |
Rush Alzheimer's Disease Center (RRID:SCR_008763) | RADC | biomaterial supply resource, brain bank, material resource, tissue bank | An Alzheimer's disease center which researches the cause, treatment and prevention of Alzheimer's disease with a focus on four main areas of research: risk factors for Alzheimer's and related disorders, the neurological basis of the disease, diagnosis, and treatment. Data includes a number of computed variables that are available for ROS, MAP and MARS cohorts. These variables are under categories such as affect and personality, chronic medical conditions, and clinical diagnosis. Specimens include ante-mortem and post-mortem samples obtained from subjects evaluated by ROS, MAP and clinical study cores. Specimen categories include: Brain tissue (Fixed and frozen), Spinal cord, Muscles (Post-mortem), and Nerve (Post-mortem), among other types of specimens. Data sharing policies and procedures apply to obtaining ante-mortem and post-mortem specimens from participants evaluated by the selected cohorts of the RADC. | clinical, post mortem, ante mortem, late adult human, brain, tissue, spinal cord, muscle, nerve, dna, lymphocyte, serum, plasma, urine, fixed, frozen, cryopreserved, alzheimer's disease, memory | is listed by: One Mind Biospecimen Bank Listing | Alzheimer's disease, Alzheimer's-related disorder, Aging | NIA | Available to the research community, Data sharing policies apply to both data and specimens | nlx_144050 | SCR_008763 | Rush ADC, Rush Alzheimer's Disease Center | 2026-09-05 06:26:28 | 3 | |||||
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Sanders Brown Center on Aging Resource Report Resource Website 1+ mentions |
Sanders Brown Center on Aging (RRID:SCR_008765) | SBCoA | data or information resource, portal, topical portal | A center which focuses on research dedicated to the aging process and age-related brain diseases, as well as education, outreach, and clinical programs that promote healthy brain aging. The major foci of the Center are basic and applied research in Alzheimer's disease and related neurodegenerative disorders. Its objectives include expanding translational neuroscience research and providing educational opportunities to the general public, as well as healthcare students and professionals., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | alzheimer's disease, neurodegenerative disease, traumatic brain injury, aging process translational neuroscience |
has parent organization: University of Kentucky; Kentucky; USA is parent organization of: University of Kentucky Alzheimer's Disease Center |
Aging, Alzheimer's disease, Neurodegenerative disease | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144055 | SCR_008765 | Sanders-Brown Center on Aging | 2026-09-05 06:26:28 | 1 | ||||||
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CreZoo Resource Report Resource Website 1+ mentions |
CreZoo (RRID:SCR_008919) | CreZoo | biomaterial supply resource, material resource, organism supplier | Database of helpful set of CreERT2 driver lines expressing in various regions of the developing and adult zebrafish. The lines have been generated via the insertion of a mCherry-T2A-CreERT2 in a gene trap approach or by using promoter fragments driving CreERT2. You can search the list of all transgenic lines or single entries by insertions (gene) or expression patterns (anatomy/region). In most cases the CreERT2 expression profile using in situ hybridization at 24 hpf and 48 hpf is shown, but also additional information (e.g. mCherry or CreERT2 expression at adult stages, transactivation of a Cre-dependent reporter line) is displayed. Currently, not all insertions have been mapped to a genomic location but the database will be regularly updated adding newly generated insertions and mapping information. Your help in improving and broadening the database by giving your opinion or knowledge of expression patterns is highly appreciated. | cre, transgenic line, gene, cre line, expression pattern, expression profile, blood, blood progenitor, brain, neural tube, ear, eye, fin, heart, kidney, notochord, olfactory system, regenerating fin, somite, tailbud, ubiquitous, urogenital opening, adult zebrafish, creert2 insertion, creert2, development, developing zebrafish. image |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Dresden University of Technology; Saxony; Germany |
DFG BR 1746/3-1 | nlx_151615 | SCR_008919 | zebrafish CreZoo, CreZoo Database | 2026-09-05 06:26:30 | 1 | |||||||
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TopFIND Resource Report Resource Website 10+ mentions |
TopFIND (RRID:SCR_008918) | TopFIND | data or information resource, data repository, database, service resource, storage service resource | An integrated knowledgebase focused on protein termini, their formation by proteases and functional implications. It contains information about the processing and the processing state of proteins and functional implications thereof derived from research literature, contributions by the scientific community and biological databases. It lists more than 120,000 N- and C-termini and almost 10,000 cleavages. TopFIND is a resource for comprehensive coverage of protein N- and C-termini discovered by all available in silico, in vitro as well as in vivo methodologies. It makes use of existing knowledge by seamless integration of data from UniProt and MEROPS and provides access to new data from community submission and manual literature curating. It renders modifications of protein termini, such as acetylation and citrulination, easily accessible and searchable and provides the means to identify and analyse extend and distribution of terminal modifications across a protein. The data is presented to the user with a strong emphasis on the relation to curated background information and underlying evidence that led to the observation of a terminus, its modification or proteolytic cleavage. In brief the protein information, its domain structure, protein termini, terminus modifications and proteolytic processing of and by other proteins is listed. All information is accompanied by metadata like its original source, method of identification, confidence measurement or related publication. A positional cross correlation evaluation matches termini and cleavage sites with protein features (such as amino acid variants) and domains to highlight potential effects and dependencies in a unique way. Also, a network view of all proteins showing their functional dependency as protease, substrate or protease inhibitor tied in with protein interactions is provided for the easy evaluation of network wide effects. A powerful yet user friendly filtering mechanism allows the presented data to be filtered based on parameters like methodology used, in vivo relevance, confidence or data source (e.g. limited to a single laboratory or publication). This provides means to assess physiological relevant data and to deduce functional information and hypotheses relevant to the bench scientist. TopFIND PROVIDES: * Integration of protein termini with proteolytic processing and protein features * Displays proteases and substrates within their protease web including detailed evidence information * Fully supports the Human Proteome Project through search by chromosome location CONTRIBUTE * Submit your N- or C-termini datasets * Contribute information on protein cleavages * Provide detailed experimental description, sample information and raw data | protein, n-termini, c-termini, protease, protein cleavage, proteomics, cleavage site, terminus, modification, proteolytic processing, protein function, domain structure, protein termini, terminus modification, protease, substrate, protease inhibitor, protein interaction, protein-protein interaction, interaction, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: UniProtKB is related to: PSICQUIC Registry is related to: MEROPS has parent organization: University of British Columbia; British Columbia; Canada |
Canadian Institutes of Health Research ; Cancer Research Society ; British Columbia Proteomics Network ; Metalloproteinase Proteomics and Systems Biology ; Michael Smith Foundation for Health Research ; Breast Cancer Society of Canada ; Alexander von Humboldt-Stiftung ; BMBF ; German Academic Exchange Service |
PMID:22102574 PMID:21822272 |
Public, Acknowledgement requested | biotools:topfind, r3d100012721, nlx_151607 | https://bio.tools/topfind, https://doi.org/10.17616/R3KB8J, https://doi.org/10.17616/R3KB8J | SCR_008918 | Termini oriented protein Function Inferred Database | 2026-09-05 06:26:30 | 29 | ||||
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GIA Brain Bank Program Resource Report Resource Website 1+ mentions |
GIA Brain Bank Program (RRID:SCR_008877) | biomaterial supply resource, brain bank, material resource, tissue bank | The Brain Bank was developed with two service-minded objectives: provide a free brain autopsy to confirm clinical diagnosis of dementia, and collect, bank and provide brain tissue to qualified scientific researchers studying diseases related to dementia. By working together, patients and researchers can help us understand the origins of neurodegenerative disease and eventually improve the treatment and care of dementia. The clinical diagnosis of Alzheimer's disease can only be confirmed by brain autopsy, or the examination of brain tissue after death. This examination will determine a patients's precise type of dementia. To confirm the diagnosis of Alzheimer's, for example, the brain tissue is examined for amyloid plaques and neurofibrillary tangles by a neuropathologist. The presence of these plaques and tangles will verify the clinical diagnosis of Alzheimer's disease. While it is important to us to enroll patients with dementia, it is equally important to enroll people with no dementia. These subjects are termed as controls and the brain tissue from controls will enable researchers to make comparisons to brain tissue from dementia patients. We are seeking donations from individuals who have had an age-related neurodegenerative disease like Alzheimer's, Parkinson's, Lewy Body or other related dementia. | brain, autopsy, clinical diagnosis, brain donation, late adult human |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Texas Tech University Health Sciences Center; Texas; USA |
Dementia, Alzheimer's disease, Parkinson's disease, Lewy Body Disease, Neurodegenerative disease, Aging | nlx_149445 | SCR_008877 | TTUHSC Garrison Institute on Aging Brain Bank Program, Garrison Institute on Aging - Brain Bank Program, Garrison Institute on Aging Brain Bank Program | 2026-09-05 06:26:30 | 1 | ||||||||
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FGDP Resource Report Resource Website |
FGDP (RRID:SCR_008910) | FGDP | software resource | A Java-based, Microarray or Genechip data analysis system. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Fox Chase Cancer Center |
PMID:14734324 | GNU General Public License | OMICS_00756, biotools:fgdp | https://bio.tools/fgdp | SCR_008910 | Functional Genomics Data Pipeline (FGDP), Functional Genomics Data Pipeline | 2026-09-05 06:26:30 | 0 | |||||
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elk-reasoner Resource Report Resource Website |
elk-reasoner (RRID:SCR_008913) | ELK | software resource | ELK is an ontology reasoner with the goal of supporting the OWL 2 EL profile. ELK is a specialized reasoner for the lightweight ontology language OWL EL. The practical utility of ELK is in its combination of high performance and comprehensive support for language features. At its core, ELK employs a consequence-based reasoning engine that can take advantage of multi-core and multi-processor systems. A modular architecture allows ELK to be used as a stand-alone application, Protege plug-in, or programming library (either with or without the OWL API). | owl ontology reasoning el, owl, ontology, semantic web, reasoner, description logic, reasoner, ontology reasoner, owl el |
is listed by: Gene Ontology Tools has parent organization: University of Oxford; Oxford; United Kingdom has parent organization: Ulm University; Baden-Wurttemberg; Germany |
EPSRC EP/G02085X/1 | Open unspecified license, Apache License v2 | nlx_151493 | SCR_008913 | ELK Reasoner | 2026-09-05 06:26:30 | 0 | ||||||
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PDBj - Protein Data Bank Japan Resource Report Resource Website 10+ mentions |
PDBj - Protein Data Bank Japan (RRID:SCR_008912) | PDBj | data or information resource, data repository, database, service resource, storage service resource | PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. | protein, macromolecule, structure, sequence, ligand, binding site, nmr, molecule, gold standard |
is recommended by: NIDDK Information Network (dkNET) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: Worldwide Protein Data Bank (wwPDB) is related to: PDBe - Protein Data Bank in Europe is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: Osaka University; Osaka; Japan |
Japan Science and Technology Agency ; NBDC - National Bioscience Database Center |
PDB data, Text and images are free of all copyright restrictions. You can use them free of charge. When you reprint or cite them, Please also cite us as follows: Protein Data Bank Japan (PDBj) Please also see Terms of Use page. | nlx_151484, r3d100010910 | https://doi.org/10.17616/R3RP75, https://doi.org/10.17616/R3RP75 | SCR_008912 | PDBj, Protein Data Bank Japan | 2026-09-05 06:26:30 | 46 | |||||
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Max Planck Institute for Biological Intelligence Resource Report Resource Website |
Max Planck Institute for Biological Intelligence (RRID:SCR_008874) | institution | The Max Planck Institute of Neurobiology was a research institute of the Max Planck Society located in Martinsried, a suburb of Munich in Germany. It existed between 1984 and 2022 and merged with the Max Planck Institute for Ornithology to the new, joint Max Planck Institute for Biological Intelligence in 2023. The institute is dedicated to basic research on topics in behavioral ecology, evolutionary biology and neuroscience. | behavioral ecology, evolutionary biology, neuroscience |
has parent organization: Max-Planck-Gesellschaft is parent organization of: Connectomic reconstruction of the inner plexiform layer in the mouse retina is parent organization of: Neurostruct is parent organization of: Max Planck Institute for Biological Intelligence Imaging Core Facility is parent organization of: Max Planck Institute for Biological Intelligence Circuits - Computation – Models |
nlx_149373, Wikidata Q110824334 | https://ror.org/03g267s60 | http://www.neuro.mpg.de/2169/en | SCR_008874 | Max Planck Institute of Neurobiology | 2026-09-05 06:26:30 | 0 | |||||||
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NYU Alzheimer's Disease Center Resource Report Resource Website |
NYU Alzheimer's Disease Center (RRID:SCR_008754) | NYU ADC | biomaterial supply resource, brain bank, material resource, tissue bank | The NYU Alzheimer's Disease Center is part of the Department of Psychiatry at New York University School of Medicine. The center's goals are to advance current knowledge and understanding of brain aging and Alzheimer's disease, to expand the numbers of scientists working in the field of aging and Alzheimer's research, to work toward better treatment options and care for patients, and to apply and share its findings with healthcare providers, researchers, and the general public. The ADC's programs and services extend to other research facilities and to healthcare professionals through the use of its core facilities. The NYU ADC is made up of seven core facilities: Administrative Core, Clinical Core, Neuropathology Core, Education Core, Data Management and Biostatistics Core, Neuroimaging Core, and Psychosocial Core. | brain, tissue, alzheimer's disease, dementia, meeting resource, clinical, imaging, neuroimaging, psychosocial, post-mortem, autopsy, vaccination, treatment |
is listed by: One Mind Biospecimen Bank Listing has parent organization: New York University School of Medicine; New York; USA |
Alzheimer's disease, Dementia, Aging | NIA | Available to collaborators | nlx_144383 | http://www.med.nyu.edu/adc/ | SCR_008754 | NYU Alzheimer's Disease Center, New York University Alzheimer's Disease Center | 2026-09-05 06:26:27 | 0 | ||||
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Generic GO Term Finder Resource Report Resource Website 100+ mentions |
Generic GO Term Finder (RRID:SCR_008870) | GOTermFinder, GO-TermFinder, GO Term Finder, GO::TermFinder | analysis service resource, data analysis service, data processing software, production service resource, service resource, software application, software resource, source code | The Generic GO Term Finder finds the significant GO terms shared among a list of genes from an organism, displaying the results in a table and as a graph (showing the terms and their ancestry). The user may optionally provide background information or a custom gene association file or filter evidence codes. This tool is capable of batch processing multiple queries at once. GO::TermFinder comprises a set of object-oriented Perl modules GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script. This implementation, developed at the Lewis-Sigler Institute at Princeton, depends on the GO-TermFinder software written by Gavin Sherlock and Shuai Weng at Stanford University and the GO:View module written by Shuai Weng. It is made publicly available through the GMOD project. The full source code and documentation for GO:TermFinder are freely available from http://search.cpan.org/dist/GO-TermFinder/. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | gene ontology, gene, graph, visualization, genomics, gene association, ontology or annotation visualization, term enrichment, ontology, process, function, component, enrichment, bio.tools |
is listed by: 3DVC is listed by: Gene Ontology Tools is listed by: bio.tools is listed by: Debian is related to: Gene Ontology is related to: Generic Model Organism Database Project has parent organization: Princeton University; New Jersey; USA has parent organization: Comprehensive Perl Archive Network |
NHGRI 1R01HG002732 | PMID:15297299 | Free for academic use | nlx_149293, biotools_go_term_finder | https://bio.tools/go_term_finder | SCR_008870 | Generic Gene Ontology (GO) Term Finder, Generic Gene Ontology Term Finder | 2026-09-05 06:26:30 | 108 | ||||
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Agile Protein Interactomes DataServer Resource Report Resource Website 10+ mentions |
Agile Protein Interactomes DataServer (RRID:SCR_008871) | APID | analysis service resource, data access protocol, data analysis service, data or information resource, database, production service resource, service resource, software resource, web service | APID Interactomes (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). The interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier. | protein, protein interaction, interactions, ppi, interactomes, analysis, gene, ontology, functional, environment, data, network, graphic, visualize |
is listed by: Gene Ontology Tools is related to: PSICQUIC Registry is related to: Gene Ontology is related to: BIND is related to: Biological General Repository for Interaction Datasets (BioGRID) is related to: Database of Interacting Proteins (DIP) is related to: HPRD - Human Protein Reference Database is related to: IntAct is related to: MINT has parent organization: University of Salamanca; Salamanca; Spain |
Junta de Castilla y Leon ; Spanish Ministerio de Sanidad y Consumo |
PMID:27131791 PMID:30715274 |
Free for academic use | r3d100012339, nlx_149321 | https://doi.org/10.17616/R3407P, https://doi.org/10.17616/R3407P | SCR_008871 | Agile Protein Interactomes DataServer, APID, APID Interactomes, Agile Protein Interactomes DataServer (APID), APID (Agile Protein Interactomes DataServer) | 2026-09-05 06:26:30 | 14 | ||||
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McMillen Foundation Resource Report Resource Website 1+ mentions |
McMillen Foundation (RRID:SCR_008908) | McMillen Foundation | funding resource | A foundation that offers grants for researchers in cardiology, lipid and organ transplant in Washington and Alaska. The Robert B McMillen Foundation is a non-profit charitable foundation established to; promote research in the areas of cardiology, lipid and organ transplant, support education at the university and college level in the states of Washington and Alaska and provide funding for social service organizations. What we fund: * MEDICAL: 50% of our annual giving is earmarked for medical research. We will consider making grants to non-profit organizations involved in researching cardiology, lipid and organ transplants. * EDUCATION: 25% of our annual giving is earmarked for Education at the University level in the states of Washington and Alaska. Funding will be provided to support the art departments of post secondary schools who offer a degree in the visual arts. * SOCIAL: 25% of our annual giving is earmarked for social areas including, but not limited to, Goodwill, Salvation Army & United Way. Preference is given to organizations and/or programs that use art as the vehicle to impact communities and change individual lives. | visual arts, art, medical research, medicine, research, cardiology, lipid, organ transplant, social service, grant, social enhancement, higher education, washington, alaska, scholarship | nlx_151472 | SCR_008908 | Robert B McMillen Foundation | 2026-09-05 06:26:30 | 1 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
