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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Human and Information Science Laboratory Resource Report Resource Website |
Human and Information Science Laboratory (RRID:SCR_008329) | data or information resource, laboratory portal, organization portal, portal | This site provides information about the NTT Human and Information Science Laboratory. Technologies that enable users to get along well with information and technologies that can handle information properly on computers and networks are the keys to secure and high-quality information distribution services in a network society. In realizing those technologies, a comprehensive understanding of how human beings, the creators and the recipients of information, process information and novel principles for handling information are indispensable. From this viewpoint, the NTT Human and Information Science Laboratory has been pursuing scientific research in two areas: Sensory and Emotion Research, and Sensory and Motor Research. Sponsors: This resource is supported by NTT Communication Science Laboratories. | nif-0000-24768 | SCR_008329 | Human and Information Science Lab | 2026-09-12 12:57:02 | 0 | |||||||||||
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University of Wollongong; New South Wales; Australia Resource Report Resource Website 1+ mentions |
University of Wollongong; New South Wales; Australia (RRID:SCR_008322) | UOW | university | Public research university in New South Wales, Australia which offers degree programs across a wide spectrum of disciplines, as well as providing research facilities to scientists | is parent organization of: University of Wollongong Labs and Facilities | nlx_155520 | SCR_008322 | Wollongong University, UWo, Wollongong, University of Wollongong, UWol | 2026-09-12 12:57:02 | 4 | |||||||||
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Aging Intervention Foundation Resource Report Resource Website |
Aging Intervention Foundation (RRID:SCR_008288) | funding resource | A 501(c)(3) non-profit organization that gives out grants created to develop new therapies to control and reverse the causes of aging, as well as treat and prevent the diseases of aging. The goal is to eventually control the processes of aging, reverse their effects, and stay younger longer and ultimately create indefinite youthful, happy and productive lifespan using innovative scientific methods that are under development today in biotech companies and research labs around the world. The foundation also offers education on what we can do now to stay younger, live longer and be happier while new therapies are being developed. | Aging | nif-0000-24032 | SCR_008288 | AIF | 2026-09-12 12:57:02 | 0 | ||||||||||
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Computational and Neural Systems Resource Report Resource Website |
Computational and Neural Systems (RRID:SCR_008316) | data or information resource, department portal, organization portal, portal | The Computation and Neural Systems degree program is organized jointly by the Division of Biology, the Division of Engineering and Applied Science, and the Division of Physics, Mathematics and Astronomy. It is the program''s objective to provide a broad knowledge of this inherently multidisciplinary field, while at the same time requiring an appropriate depth of knowledge in the particular field of the thesis research. For example, a student working on cooperative circuits for early visual processing will also develop an in-depth knowledge of the anatomy and electrophysiology of early visual areas and a knowledge of visual psychophysics. A student working on olfactory cortex electrophysiology and its simulation would include the study of concurrent processing and the ethology of olfaction, and the relevant knowledge of dynamical and collective systems. A student working on the theory of complex systems could study collective and statistical properties of physics as well as the anatomical and algorithmic structure of biological and applied networks. Sponsors: The computational and neural systems is funded by the California Institute of Technology. | electrophysiology, engineering, ethology, anatomy, applied science, astronomy, biology, computational, degree, mathematics, neural, olfaction, physics, psychophysics, structure, system, visual | nif-0000-24682 | SCR_008316 | CNS | 2026-09-12 12:57:02 | 0 | ||||||||||
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Conical: The Computational Neuroscience Class Library Resource Report Resource Website 1+ mentions |
Conical: The Computational Neuroscience Class Library (RRID:SCR_008318) | software resource | CONICAL is a C++ class library for building simulations common in computational neuroscience. Currently its focus is on compartmental modeling, with capabilities similar to GENESIS and NEURON. Future classes may support reaction-diffusion kinetics and more. A key feature of CONICAL is its cross-platform compatibility; it has been fully co-developed and tested under Unix, DOS, and Mac OS. Any C++ compiler which adheres to the emerging ANSI standard should be able to compile the CONICAL classes without modification. It is intended to encourage the rapid development of simulator software, especially on non-Unix systems where such software is sorely lacking. The present focus of the CONICAL library of C++ classes is compartmental modeling. A model neuron is built out of compartments, usually with a cylindrical shape. When small enough, these open-ended cylinders can approximate nearly any geometry, just as the stack of cylinders approximates a cone in the logo above. While any compartment has passive electrical properties (like a simple resistor-capacitor circuit), more interesting properties require the use of active ion channels whose conductance varies as a function of the time or membrane voltage. A standard Hodgkin-Huxley ion channel is included as one of the built-in CONICAL object types. Most of the voltage-gated ion channels in the literature can be directly implemented merely by setting the parameters of this class. For extensibility, this class is derived from several layers of more general classes. Connections between neurons can be implemented in several ways. For a gap junction (i.e., simple electrical connection), a passive current (or pair of currents, one in each direction) can be used. Synapses are more complex objects, but used in a similar fashion. The Alpha-function synapse is a very popular model of synaptic transmission, and is a basic CONICAL class. More complex (and realistic) synapses can be built using the Markov-model synapse. (A Markov model can be used on its own for other purposes as well.) In addition to classes directly related to neural modeling, CONICAL contains several other useful object types. These include a current injector, and a column-oriented output stream for storing data in table form. | c++, computational, diffusion, kinetic, modeling, neural, neuron, neuroscience, reaction, simulation, model, compartmental model |
is listed by: 3DVC has parent organization: University of California at San Diego; California; USA |
nif-0000-24684 | SCR_008318 | Conical | 2026-09-12 12:57:02 | 9 | |||||||||
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IEEE Resource Report Resource Website 500+ mentions |
IEEE (RRID:SCR_008314) | community building portal, data or information resource, portal | IEEE is the worlds largest professional association advancing innovation and technological excellence for the benefit of humanity. IEEE and its members inspire a global community to innovate for a better tomorrow through its highly cited publications, conferences, technology standards, and professional and educational activities. IEEE is the trusted voice for engineering, computing and technology information around the globe. Through its global membership, IEEE is a leading authority on areas ranging from aerospace systems, computers and telecommunications to biomedical engineering, electric power and consumer electronics among others. Members rely on IEEE as a source of technical and professional information, resources and services. To foster an interest in the engineering profession, IEEE also serves student members in colleges and universities around the world. Other important constituencies include prospective members and organizations that purchase IEEE products and participate in conferences or other IEEE programs. IEEE has: -more than 375,000 members in more than 160 countries; 45 percent of whom are from outside the United States -more than 80,000 student members -329 sections in ten geographic regions worldwide -1,860 chapters that unite local members with similar technical interests -1,789 student branches in 80 countries -483 student branch chapters at colleges and universities -390 affinity groups -- IEEE Affinity Groups are non-technical sub-units of one or more Sections or a Council. The Affinity Group patent entities are Consultants'' Network, Graduates of the Last Decade (GOLD), Women in Engineering (WIE) and Life Members (LM) IEEE''s core purpose is to foster technological innovation and excellence for the benefit of humanity. It will be essential to the global technical community and to technical professionals everywhere, and be universally recognized for the contributions of technology and of technical professionals in improving global conditions., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | electric, electronic, engineering, aerospace, biomedical, computer, computing, conference, consumer, humanity, information, innovation, power, publication, system, technological, technology, telecommunication | is used by: Colwiz | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24668 | SCR_008314 | IEEE | 2026-09-12 12:57:02 | 594 | ||||||||
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Track-HD Resource Report Resource Website 10+ mentions |
Track-HD (RRID:SCR_008397) | data or information resource, portal, topical portal | TRACK-HD is a multi-centermulti-national prospective, observational biomarker study of premanifest and early stage HD with no experimental treatment. Objectives: - determine what combination of measures is the most sensitive for detecting change over the natural course of premanifest and early HD - to validate these as potential outcome measures for use in future therapeutic trials Design: - focused on intensive battery of novel assessments - extensive annual assessments - dynamic and fluid protocol - robust evidence-based measures TRACK-HD is a major new international study of Huntingtons disease. It aims to be the most comprehensive study of premanifest and early HD, and will define the best combination of assessments to be used in clinical trials of disease-modifying treatments in HD. TRACK-HD began in January 2008 and involves 360 subjects at 4 sites internationally. Sponsors: This resource is supported by The UK Medical Research Council (MRC), CHDI Foundation, Inc., The Euro-HD Network, The Wellcome Trust, The Department of Health, The Huntingtons Disease Association, and The Brain Research Trust. Keywords: Biomarker, Experimental, Treatment, Research, Therapeutic, Trail, Hunginton''s, Disease, Health, | nif-0000-30055 | SCR_008397 | Track-HD | 2026-09-12 12:57:03 | 14 | |||||||||||
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Affymetrix Gene Expression Service Lab Resource Report Resource Website 10+ mentions |
Affymetrix Gene Expression Service Lab (RRID:SCR_008396) | analysis service resource, data or information resource, laboratory portal, material analysis service, organization portal, portal, production service resource, service resource | Affymetrix Gene Expression Service Lab, AGESL was established by IPMB, IMB and IBS, Academia Sinica and opened for service in June 2004. The lab provides a full service from quality control of customer-provided RNA samples to raw data acquisition, including Affymetrix recommended QC procedures, cDNA synthesis, in vitro transcription, fragmentation, hybridization, washing, staining and scanning. Sponsors: This resource is supported by Affymetrix, Inc. Keywords: Gene, Expression, Service, Laboratory, RNA, Data, Synthesis, cDNA, In vitro, Transcription, Fragmentation, Hybrdization, Washing, Staining, Scanning, |
has parent organization: Affymetrix has parent organization: Affymetrix |
nif-0000-30071 | SCR_008396 | AGESL | 2026-09-12 12:57:03 | 19 | ||||||||||
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YouTube Educational Portal Resource Report Resource Website |
YouTube Educational Portal (RRID:SCR_008310) | data or information resource, training resource, video resource | This resource is geared towards providing educational video in various fields. All the videos are compiled from various sources and are freely accessible. Some of the topics covered are: - Business - Education - Engineering - Fine Arts & Design - Health & Medicine - History - Humanities - Journalism & Media - Law - Literature - Mathematics - Science - Social Science Sponsors: This resource is supported by YouTube, LLC. | education, educational, engineering, fine arts, business, design, health, history, humanities, journalism, law, literature, mathematics, media, medicine, science, social science | nif-0000-24412 | SCR_008310 | YouTube EDU | 2026-09-12 12:57:02 | 0 | ||||||||||
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Discovery Studio Visualizer Resource Report Resource Website 1+ mentions |
Discovery Studio Visualizer (RRID:SCR_008398) | simulation software, software application, software resource | A life science modeling and simulation suite of applications focused on optimizing the drug discovery process. Discovery Studio makes it easier to examine the properties of large and small molecules, study systems, identify leads and optimize candidates. Discovery Studio ADME Descriptors allow scientists to eliminate compounds with unfavorable ADME characteristics early in the discovery process and evaluate proposed structural refinements prior to synthesis. Applications of predictive ADME include pharmaceutical, cosmeceutical, and environmental sciences. | biomolecular, molecular, geometrics, alignment, metal, ion, informatics, workflow, absorption, drug discovery | nif-0000-30061 | SCR_008398 | Discovery Studio | 2026-09-12 12:57:03 | 7 | ||||||||||
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Abgent Resource Report Resource Website 50+ mentions |
Abgent (RRID:SCR_008393) | commercial organization | Antibody supplier. | antibody, peptide, synthesis, protein, primary antibody, reagent, peptide synthesis, cell signaling, post-translational modification, stem cell, neuronal development, neurodegenerative disease, gene regulation, development, autophagy, apoptosis, stem cell, phosphorylation, cell function, gene, regulation, research, library, human, kinome, cdna clone, rnai, tissue, cell | is listed by: ScienceExchange | nif-0000-30051, SciEx_4353 | https://www.abcepta.com/ | SCR_008393 | Abgent Antibodies and Peptides, Abcepta | 2026-09-12 12:57:03 | 67 | ||||||||
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jViewbox Resource Report Resource Website |
jViewbox (RRID:SCR_008274) | data processing software, image processing software, software application, software resource | A portable software framework for medical imaging research. jViewbox consists of a set of Java classes organized under a simple but extensive API that provides the core functionality of 2D image presentation needed by most imaging applications. It follows Java's Swing model closely to make it easy for application developers to build GUIs where end users can use various tools in a tool bar to manipulate the image displays. No optional add-ons or native code is used, which makes jViewBox compatible with any standard Java 2 Runtime Environment (version 1.3 or later). | imaging, magnetic resonance imaging, image processing software |
is related to: Laboratory of Neuro Imaging has parent organization: University of Southern California; Los Angeles; USA |
NIBIB 9P41EB015922-15; NCRR 2-P41-RR-013642-15 |
Available for educational and research purposes only | nif-0000-23317 | SCR_008274 | 2026-09-12 12:57:02 | 0 | ||||||||
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MODELLER Resource Report Resource Website 5000+ mentions |
MODELLER (RRID:SCR_008395) | data or information resource, portal, simulation software, software application, software resource, topical portal | Software tool as Program for Comparative Protein Structure Modelling by Satisfaction of Spatial Restraints. Used for homology or comparative modeling of protein three dimensional structures. User provides alignment of sequence to be modeled with known related structures and MODELLER automatically calculates model containing all non hydrogen atoms. | comparative, protein, structure, modelling, satisfaction, spatial, restrain, homology, 3D, alignment, sequence, hydrogen, atom, cluster |
is listed by: SoftCite has parent organization: University of California at San Francisco; California; USA |
IBM ; Intel ; NIGMS P01 GM71790; NIGMS R01 GM54762; NIGMS U54 GM62529; NIH P01 A135707; Sandler Family Supporting Foundation |
Restricted | nif-0000-30054 | SCR_008395 | 2026-09-12 12:57:03 | 5873 | ||||||||
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BioLit Resource Report Resource Website 1+ mentions |
BioLit (RRID:SCR_008270) | data or information resource, database, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 16, 2016. The establishment of open access literature makes it possible for knowledge to be extracted from scholarly articles and included in other resources. BioLit aims to extract database identifiers and rich meta-data from open access articles in the life sciences and integrate that information with existing biological databases. We have begun prototyping this effort using a clone of the RCSB Protein Data Bank, a database of macromolecular structures. Cyberinfrastructure is integral to all aspects of conducting experimental research and distributing those results. However, it has yet to make a similar impact on the way we communicate that information. Peer-reviewed publications have long been the currency of scientific research as they are the fundamental unit through which scientists communicate with and evaluate each other. However, in striking contrast to the data, publications have yet to benefit from the opportunities offered by cyberinfrastructure. While the means of distributing publications has vastly improved, publishers have done little else to capitalize on the electronic medium. In particular, semantic information describing the content of these publications is sorely lacking, as is the integration of this information with data in public repositories. This is confounding considering that many basic tools for marking-up and integrating publication content in this manner already exist, such as a centralized literature database, relevant ontologies, and machine-readable document standards. We believe that the research community is ripe for a revolution in scientific communication and that the current generation of scientists will be the one to push it forward. These scientists, generally graduate students and new post-docs and have grown up with cyberinfrastructure as a part of their daily lives, not just a specialized aspect of their profession. They have a natural ability to do science in an electronic environment without the need for printed publications or static documents and, in fact, can feel quite limited by the traditional format of a publication. Perhaps most importantly, they appreciate that the sheer amount of data and the number of publications is prohibitive to the traditional methods of keeping current with the literature. Fink, L., Bourne, P. Reinventing Scholarly Communication for the Electronic Age, CTWatch Quarterly, Volume 3, Number 3, August 2007., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | literature, pubmed, ontology | has parent organization: University of California at San Diego; California; USA | DOI:10.1093/nar/gkn317 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-23836 | SCR_008270 | BioLit | 2026-09-12 12:57:01 | 6 | |||||||
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ATASSIA DI FRIEDREICH - PROGETTI 2006 Resource Report Resource Website 1+ mentions |
ATASSIA DI FRIEDREICH - PROGETTI 2006 (RRID:SCR_008391) | data or information resource, portal, topical portal | The aim of this resource is to facilitate and promote, even through fund-raising, the scientific research for the treatment of Friederich''s Ataxia. The mission of this portal is to: - To distribute information to the people affected by the disease and to make the general population aware. - Promote, fund and support the diagnosis, research, cure and potential treatments. - Promote the cooperation with other voluntary associations both national and international. Sponsors: This resource is supported by the RUDI Committee. Keywords: Research, Diagnosis, Cure, Treatment, Disease, Scientific, Friederich''s Ataxia, | nif-0000-30043 | SCR_008391 | GoFar | 2026-09-12 12:57:03 | 1 | |||||||||||
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Caribbean Primate Research Center Resource Report Resource Website 1+ mentions |
Caribbean Primate Research Center (RRID:SCR_008345) | CPRC | biomaterial supply resource, material resource, organism supplier | Center for the study of non-human primates. Its mission is the study and use of non-human primates as models for studies of social and biological interactions and for the discovery of methods of prevention, diagnosis and treatment of diseases that afflict humans. Through the stewardship of three unique facilities—Cayo Santiago Field Station, Sabana Seca Field Station, and the Laboratory of Primate Morphology supports a diverse range of research programs that enhance understanding of primate biology and behavior, with direct applications in biomedical and translational research. | NPRC, NPRC Consortium, ORIP, environment, genetic, antigen, behavior, biological, biomedical, birth, blood, conception, dengue, disease, human, immune system, laboratory, macaca mulatta, macaque, model, monkey, morphology, movement, pathology, primate, reproductive biology, researcher, rh, rhesus, scientific, serological, siv, skeletal system, vaccine, variation, virology |
is listed by: National Primate Research Center Consortium has parent organization: University of Puerto Rico; Puerto Rico; USA |
NIH Office of the Director P40 OD012217 | nif-0000-25870 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008345 | Caribbean Primate Research Center Program | 2026-09-12 12:57:02 | 7 | ||||||
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G protein receptor interaction feature finding instrument Resource Report Resource Website 10+ mentions |
G protein receptor interaction feature finding instrument (RRID:SCR_008343) | analysis service resource, production service resource, resource, service resource | Griffin (G-protein-receptor interacting feature finding instrument) is a high-throughput system to predict GPCR - G-protein coupling selectively with the input of GPCR sequence and ligand molecular weight. This system consists of two parts: 1) HMM section using family specific multiple alignment of GPCRs, 2) SVM section using physico-chemical feature vectors in GPCR sequence. G-protein coupled receptors (GPCR), which is composed of seven transmembrane helices, play a role as interface of signal transduction. The external stimulation for GPCR, induce the coupling with G-protein (Gi/o, Gq/11, Gs, G12/13) followed by different kinds of signal transduction to inner cell. About half of distributed drugs are intending to control this GPCR - G-protein binding system, and therefore this system is important research target for the development of effective drug. For this purpose, it is necessary to monitor, effectively and comprehensively, of the activation of G-protein by identifying ligand combined with GPCR. Since, at present, it is difficult to construct such biochemical experiment system, if the answers for experimental results can be prepared beforehand by using bioinformatics techniques, large progress is brought to G-protein related drug design. Previous works for predicting GPCR-G protein coupling selectivity are using sequence pattern search, statistical models, and HMM representations showed high sensitivity of predictions. However, there are still no works that can predict with both high sensitivity and specificity. In this work we extracted comprehensively the physico-chemical parameters of each part of ligand, GPCR and G-protein, and choose the parameters which have strong correlation with the coupling selectivity of G-protein. These parameters were put as a feature vector, used for GPCR classification based on SVM. | drug, alignment, biochemical, bioinformatic, coupling, gpcr, g-protein, helix, instrument, interface, ligand, molecular, pattern, physico-chemical, receptor interacting, sequence, signal transduction, stimulation, svm, system, technique, transmembrane, weight, instrument, equipment, hardware, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Computational Biology Research Center Core Facility |
National Institute of Advanced Industrial Science and Technology | nif-0000-25210, biotools:griffin | https://bio.tools/griffin | SCR_008343 | Griffin | 2026-09-12 12:57:02 | 21 | |||||||
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Xiphophorus Genetic Stock Center Resource Report Resource Website 100+ mentions |
Xiphophorus Genetic Stock Center (RRID:SCR_008340) | biomaterial supply resource, material resource, organism supplier | Supplier of xiphophorus (platyfish or swordtails) from pedigreed parental lines, representing variety of species. In addition to supplying strains and providing consultation on husbandry and genetic questions, the XGSC produces custom interspecies hybrids (both first generation F1, and backcross hybrid generation BC1) for a variety of projects. | RIN, Resource Information Network, est, fish, cryopreservation, microsatellite, swordtail, RRID Community Authority |
is used by: Integrated Animals is listed by: Resource Information Network has parent organization: Texas State University; Texas; USA |
NCI P01 CA75137; NIH Office of the Director R24 OD011120; University of Texas MD Anderson Center |
nif-0000-24971 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008340 | XGSC | 2026-09-12 12:57:02 | 109 | |||||||
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Nature Supplements: Collections archive Resource Report Resource Website |
Nature Supplements: Collections archive (RRID:SCR_008337) | data or information resource, narrative resource, portal, topical portal | This website provides summary collections written for a broad audience highlighting some of the significant advances in a particular field. These are not scientific articles although they may reference scientific work. Sponsors: This resource is supported by Nature.com | drug, energy, gene, gene targeting, aids, animal, biogenesis, cancer, cell, disease, genomics, health, hiv, human immunodeficiency virus, malaria, metagenomics, microrna, mrna, nanotechnology, neuropathic, pain, rnai, rna plant, therapy, vaccine | nif-0000-24926 | SCR_008337 | Nature Collections Supplements | 2026-09-12 12:57:02 | 0 | ||||||||||
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Institute of Neuroinformatics Resource Report Resource Website 1+ mentions |
Institute of Neuroinformatics (RRID:SCR_008331) | institution | The mission of the Institute is to discover the key principles by which brains work and to implement these in artificial systems that interact intelligently with the real world. The Institute of Neuroinformatics is built of many people covering a wide range of disciplines and research areas. The major research projects and areas are listed below. - Behavior and Cognition: At the Institute of Neuroinformatics researchers investigate in Behavior and Cognition on various levels, ranging from neuronal circuit models of learning and adaptation over psychophysical experiments for color constancy up to modeling complex behavioral tasks such as exploration and goal-directed navigation. - Computation in Neural Circuits: By examining the brains of cats, rats and monkeys, and by making simulations of the cortex, INI hopes to learn how this circuit performs such widely different tasks. This knowledge might lead to advances in how computers are designed, and will certainly lead to advances in the subtlety and power of medical neuroscience. - Neurotechnologies: INI aims to harness the principles of biological computation, which can be expected to have a major impact on the technology market as autonomous intelligence pervades equipment, vehicles, buildings, utilities and clothing. Sponsors: INI is supported by European Union (EU), Gerbert Ruf Stiftung, Neuroscience Center (ZNZ), Swiss Confederation (KTI), Swiss Federal Institute of Technology Zurich (ETH), Swiss National Science Foundation (SNF), University of Zurich (UZH), and VW Stiftung | adaptation, artificial system, autonomous, behavior, biological, brain, cat, circuit, cognition, color, computation, constancy, cortex, intelligence, learning, medical, model, monkey, neural, neuroinformatics, neuronal, neuroscience, neurotechnology, psychophysical, rat, researcher, simulation, technology | has parent organization: University of Zurich; Zurich; Switzerland | nif-0000-24788 | SCR_008331 | INI | 2026-09-12 12:57:02 | 5 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
