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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Dana-Farber Cancer Institute Resource Report Resource Website 1+ mentions |
Dana-Farber Cancer Institute (RRID:SCR_003040) | DFCI | institution |
Cancer institute that provides expert, compassionate care to children and adults with cancer while advancing the understanding, diagnosis, treatment, cure, and prevention of cancer and related diseases. As an affiliate of Harvard Medical School and a Comprehensive Cancer Center designated by the National Cancer Institute, the Institute also provides training for new generations of physicians and scientists, designs programs that promote public health particularly among high-risk and underserved populations, and disseminates innovative patient therapies and scientific discoveries to their target community across the United States and throughout the world. |
child, adult human, pediatric, young human |
has parent organization: Harvard Medical School; Massachusetts; USA is parent organization of: Spotfinder is parent organization of: TM4 Microarray Software Suite - TIGR MultiExperiment Viewer is parent organization of: Gene Index Project is parent organization of: CistromeMap is parent organization of: BINOCh is parent organization of: Dana Farber Tissue Bank is parent organization of: CistromeFinder is parent organization of: TM4 is parent organization of: WorfDB is parent organization of: Predictive Networks is parent organization of: RamiGO is parent organization of: DFCI Animal Resources Facility is parent organization of: DFCI Biohazard Containment Core Facility is parent organization of: DFCI Biospecimen Repository Core Facility is parent organization of: DFCI Blais Proteomics Center is parent organization of: DFCI Clinical Research Laboratory is parent organization of: DFCI Survey and Data Management Core is parent organization of: DFCI Flow Cytometry Core Facility is parent organization of: DFCI Medical Arts Core Facility is parent organization of: DFCI Microarray Core Facility is parent organization of: Dana-Farber Cancer Institute Molecular Biology Core Facility is parent organization of: DFCI RNA Interference Screening Facility is parent organization of: DFCI Shannon McCormack Advanced Molecular Diagnostics Laboratory is parent organization of: MAnorm is parent organization of: NPS is parent organization of: DFCI Confocal and Light Microscopy Core Facility is parent organization of: DFCI Monoclonal Antibody Core Facility is parent organization of: Dana-Farber Cancer Institute Labs and Facilities is parent organization of: DFCI Center for Cancer Computational Biology is parent organization of: GeneSigDB is parent organization of: MACS is parent organization of: DGAP |
Cancer | NCI ; Jimmy Fund |
Free, Freely available | Crossref funder ID: 100007886, grid.65499.37, Wikidata: Q1159198, ISNI: 0000 0001 2106 9910, nif-0000-30432 | https://ror.org/02jzgtq86 | SCR_003040 | SciCrunch Registry | Dana Farber Cancer Institute, Dana-Farber | 2026-10-31 12:13:16 | 6 | ||||
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JournalGuide Resource Report Resource Website 1+ mentions |
JournalGuide (RRID:SCR_003236) | JournalGuide | data access protocol, data or information resource, database, software resource, web service | Database of journal information that provides tools to search, sort, filter, compare, and evaluate scholarly journals. In addition to searching by journal name, category or publisher, authors can use title and abstract of paper to discover journals that have already published articles on similar topics. Data sources include major industry data sets, public resources, information submitted directly by journal editors, and real-life publishing experiences submitted by authors. | scholarly, journal | is listed by: FORCE11 | Free, Freely available | nlx_157276 | SCR_003236 | SciCrunch Registry | Journal Guide | 2026-10-31 12:13:20 | 4 | |||||||
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EnablingOpenScholarship Resource Report Resource Website |
EnablingOpenScholarship (RRID:SCR_003235) | EOS | knowledge environment | An organization for universities and research institutions that is an information service and a forum for raising and discussing issues around the mission of modern universities and research institutions, particularly with regard to the creation, dissemination and preservation of research findings. Its aim is to further the opening up of scholarship and research that we are now seeing through the growing open access, open education, open science and open innovation movements. These, and other, "open" approaches to scholarship are changing the way research and learning are done and there are profound implications for universities and research institutions. EOS has been established to help guide developments and to assist others in understanding the issues and their implications. The context in which EOS has been established is that of increasing interest from governments, funders and the research community itself in opening up the way research is carried out and communicated. This interest is complemented by new research practices and processes that can work effectively only in an open, collaborative environment. Developments of relevance to the mission of EnablingOpenScholarship are reported on and news and details of forthcoming meetings, briefings and discussion sessions is provided. | scholarship, open research, open access |
is listed by: FORCE11 has parent organization: University of Liege; Wallonia; Belgium |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157274 | SCR_003235 | SciCrunch Registry | 2026-10-31 12:13:21 | 0 | ||||||||
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Citation Style Language Resource Report Resource Website 1+ mentions |
Citation Style Language (RRID:SCR_003234) | CSL | data or information resource, interchange format, markup language, narrative resource, standard specification | An open XML-based language used to describe the formatting of citations and bibliographies. CSL has become the standard way to add citation support to software. | annotation, markup, language |
is used by: Mendeley is used by: BibSonomy is used by: ReadCube is used by: Zotero is used by: Colwiz is listed by: FORCE11 is related to: CitationStyles |
Zotero ; Papers ; Mendeley |
Free, Freely available | nlx_157273 | https://www.force11.org/node/5067 | SCR_003234 | SciCrunch Registry | Citation Styles | 2026-10-31 12:13:22 | 1 | |||||
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GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool Resource Report Resource Website 1+ mentions |
GOLEM An interactive, graphical gene-ontology visualization, navigation, and analysis tool (RRID:SCR_003191) | GOLEM | analysis service resource, data analysis service, production service resource, service resource, software resource, source code | THIS RESOURCE IS NO LONGER IN SERVICE, documented July 7, 2017. Welcome to the home of GOLEM: An interactive, graphical gene-ontology visualization, navigation,and analysis tool on the web. GOLEM is a useful tool which allows the viewer to navigate and explore a local portion of the Gene Ontology (GO) hierarchy. Users can also load annotations for various organisms into the ontology in order to search for particular genes, or to limit the display to show only GO terms relevant to a particular organism, or to quickly search for GO terms enriched in a set of query genes. GOLEM is implemented in Java, and is available both for use on the web as an applet, and for download as a JAR package. A brief tutorial on how to use GOLEM is available both online and in the instructions included in the program. We also have a list of links to libraries used to make GOLEM, as well as the various organizations that curate organism annotations to the ontology. GOLEM is available as a .jar package and a macintosh .app for use on- or off- line as a stand-alone package. You will need to have Java (v.1.5 or greater) installed on your system to run GOLEM. Source code (including Eclipse project files) are also available. GOLEM (Gene Ontology Local Exploration Map)is a visualization and analysis tool for focused exploration of the gene ontology graph. GOLEM allows the user to dynamically expand and focus the local graph structure of the gene ontology hierarchy in the neighborhood of any chosen term. It also supports rapid analysis of an input list of genes to find enriched gene ontology terms. The GOLEM application permits the user either to utilize local gene ontology and annotations files in the absence of an Internet connection, or to access the most recent ontology and annotation information from the gene ontology webpage. GOLEM supports global and organism-specific searches by gene ontology term name, gene ontology id and gene name. CONCLUSION: GOLEM is a useful software tool for biologists interested in visualizing the local directed acyclic graph structure of the gene ontology hierarchy and searching for gene ontology terms enriched in genes of interest. It is freely available both as an application and as an applet. | gene ontology, ontology visualization, ontology analysis |
is related to: Gene Ontology has parent organization: Princeton University; New Jersey; USA |
NIGMS R01 GM071966; NSF IIS-0513552; NIGMS P50 GM071508 |
PMID:17032457 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30620 | https://lsi.princeton.edu/golem-interactive-graph-based-gene-ontology-navigation-and-analysis-tool | SCR_003191 | SciCrunch Registry | GOLEM An interactive graphical gene-ontology visualization navigation and analysis tool, GOLEM An interactive graphical gene-ontology visualization navigation analysis tool | 2026-10-31 12:13:20 | 3 | ||||
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ARC Centre of Excellence in Vision Science Resource Report Resource Website |
ARC Centre of Excellence in Vision Science (RRID:SCR_003196) | ACEVS | data or information resource, portal, topical portal | Centre of Excellence in Vision Science that brings together major vision research programs at the The Australian National University with cognate programs at the Universities of Queensland, Sydney and Western Australia. The research is focused on unravelling the cellular basis of visual sensing and processing; on revealing the algorithms that underlie the visual control of behavior and perception; and on discovering the cellular mechanisms that make the eye and retina stable, and whose breakdown causes blindness. | vision, eye, retina, blindness, perception, behavior, sense | has parent organization: Australian National University; Acton; Australia | Australian Research Council | Free, Freely available | nlx_157285 | https://www.nature.com/nature-index/institution-outputs/australia/arc-centre-of-excellence-in-vision-science-acevs/55d3f273140ba0b6018b456f | SCR_003196 | SciCrunch Registry | ARC Center of Excellence in Vision Science, Australian Research Council Centre of Excellence in Vision Science | 2026-10-31 12:13:21 | 0 | |||||
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Inter-university Consortium for Political and Social Research (ICPSR) Resource Report Resource Website 10+ mentions |
Inter-university Consortium for Political and Social Research (ICPSR) (RRID:SCR_003194) | ICPSR | consortium, data or information resource, organization portal, portal | Data archive of more than 500,000 files of research in the social sciences, hosting 16 specialized collections of data in education, aging, criminal justice, substance abuse, terrorism, and other fields. ICPSR comprises a consortium of about 700 academic institutions and research organizations providing training in data access, curation, and methods of analysis for the social science research community. ICPSR welcomes and encourages deposits of digital data. ICPSR's educational activities include the Summer Program in Quantitative Methods of Social Research external link, a comprehensive curriculum of intensive courses in research design, statistics, data analysis, and social methodology. ICPSR also leads several initiatives that encourage use of data in teaching, particularly for undergraduate instruction. ICPSR-sponsored research focuses on the emerging challenges of digital curation and data science. ICPSR researchers also examine substantive issues related to our collections, with an emphasis on historical demography and the environment. | psychiatry, survey, digital, social science, data archive, education, criminal justice, terrorism, child care, early education, data sharing, health, medical care, minority, mental health, political science, demography, economics, history, gerontology, public health, terrorism, psychology, sociology, foreign policy, terrorism, psychology, law |
uses: DataCite lists: Advanced Cognitive Training for Independent and Vital Elderly (ACTIVE) lists: Mexican Health and Aging Study lists: Human Mortality Database lists: Religion Aging and Health Survey lists: Resources for Enhancing Alzheimers Caregiver Health lists: Seattle Longitudinal Study lists: Social Environment and Biomarkers of Aging Study in Taiwan lists: Indonesia Family Life Survey lists: Piedmont Health Survey of the Elderly lists: English Longitudinal Study of Ageing lists: Luxembourg Income Study lists: Alameda County Health and Ways of Living Study lists: Second Malaysian Family Life Survey lists: Charleston Heart Study lists: Census Microdata Samples Project lists: Chinese Longitudinal Healthy Longevity Survey (CLHLS) lists: Established Populations for Epidemiologic Studies of the Elderly lists: Los Angeles Family and Neighborhood Survey lists: Health and Retirement Study lists: Iowa 65+ Rural Health Study lists: Longitudinal Study of Generations lists: Longitudinal Study of Elderly Mexican American Health lists: Matlab Health and Socio-Economic Survey lists: National Long Term Care Survey lists: National Longitudinal Mortality Study lists: National Longitudinal Survey of Older Men lists: National Nursing Home Survey Follow-Up lists: National Social Life Health and Aging Project (NSHAP) lists: National Survey of the Japanese Elderly lists: National Survey of Midlife Development in the United States lists: Nihon University Japanese Longitudinal Study of Aging lists: Panel Study of Income Dynamics lists: Public Use Microdata Sample for the Older Population lists: International Data Base lists: German Socio-Economic Panel lists: New Beneficiary Data System lists: Longitudinal Studies of Aging lists: National Survey of Families and Households lists: National Survey of Self-Care and Aging lists: Epidemiology of Chronic Disease in the Oldest Old lists: Aging Status and Sense of Control (ASOC) is listed by: re3data.org has parent organization: University of Michigan; Ann Arbor; USA is parent organization of: National Addiction and HIV Data Archive Program (NAHDAP) is parent organization of: National Archive of Computerized Data on Aging (NACDA) is parent organization of: Substance Abuse and Mental Health Data Archive |
Aging, Substance abuse, Addiction, HIV | NIA ; NICHD ; NIDA ; NIH |
nif-0000-00615 | http://www.icpsr.umich.edu/icpsrweb/landing.jsp | SCR_003194 | SciCrunch Registry | Interuniversity Consortium for Political Social Research, Inter-university Consortium for Political Social Research (ICPSR), Interuniversity Consortium for Political and Social Research | 2026-10-31 12:13:19 | 49 | |||||
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Wikispaces Resource Report Resource Website 1+ mentions |
Wikispaces (RRID:SCR_003228) | Wikispaces | commercial organization, data or information resource, narrative resource, wiki | A social writing platform, free for education, to easily create a classroom workspace where teacher and students can communicate and work on writing projects alone or in teams. Rich assessment tools give the power to measure student contribution and engagement in real-time. Wikispaces Classroom works great on modern browsers, tablets, and phones. For a fee it is also available to non-educators including companies, organizations, universities, groups, etc. | collaboration, authoring, social network |
is listed by: FORCE11 is parent organization of: Pathology Informatics Curriculum Wiki is parent organization of: Wellness Wiki |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157269 | SCR_003228 | SciCrunch Registry | Wikispaces Classroom | 2026-10-31 12:13:21 | 2 | |||||||
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Primer Designer Resource Report Resource Website 1+ mentions |
Primer Designer (RRID:SCR_003189) | Primer Designer | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. Software program to aid in designing of primers and creation of primer sheets. The program allows users to select a background and enter mutaions. An initial primer is then suggested. User can manipulate the selected primer to add or remove nucleotides from either 5? or 3? ends. A set of parameters reflecting the goodness of the primer is updated on the fly, as the user makes changes. Once happy with the primer, the information is saved in a primer sheet, which can then be uploaded to the BGME lab primer database on the Wiki. | primer, primer design |
is listed by: OMICtools is listed by: SoftCite |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02327 | https://www.thermofisher.com/us/en/home/life-science/oligonucleotides-primers-probes-genes/custom-dna-oligos/oligo-design-tools.html?ef_id=Cj0KCQjw-NfDBhDyARIsAD-ILeBszOXU4wXumqZJ--N8Z5rguB5P2-7UmpEuidzHsK1sgSXJROQ3of8aAtkqEALw_wcB:G:s&s_kwcid=AL!3652!3!683518170873!e!!g!!primer%20designer!20841448243!155985486683&cid=bid_mol_pch_r01_co_cp1358_pjt0000_bid00000_0se_gaw_nt_pur_con&gad_source=1&gad_campaignid=20841448243&gbraid=0AAAAADxi_GTCU-6xCgQrctnmtmtMSDEQj&gclid=Cj0KCQjw-NfDBhDyARIsAD-ILeBszOXU4wXumqZJ--N8Z5rguB5P2-7UmpEuidzHsK1sgSXJROQ3of8aAtkqEALw_wcB | SCR_003189 | SciCrunch Registry | 2026-10-31 12:13:20 | 2 | |||||||
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SALT Resource Report Resource Website 1000+ mentions |
SALT (RRID:SCR_003187) | SALT | software resource | Software that can accurately and sensitivity classify short reads of next-generation sequencing (NGS) into protein domain families. It is based on profile HMM and a supervised graph contribution algorithm. Compared to existing tools, it has high sensitivity and specificity in classifying short reads into their native domain families. | next-generation sequencing, protein, protein domain, short read, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: SourceForge |
PMID:23782615 | Free, Available for download, Freely available | OMICS_01565, biotools:salt | https://bio.tools/salt | SCR_003187 | SciCrunch Registry | SALT - Protein domain classifier | 2026-10-31 12:13:19 | 1307 | |||||
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resExomeDB Resource Report Resource Website |
resExomeDB (RRID:SCR_003224) | resExomeDB | data or information resource, data repository, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 28,2025. An online catalog for whole-exome sequencing (WES) results including mutations and gene-disease associations identified by WES. It is browsable and searchable by mutation, gene, study or publication. In addition, it centralizes all publications, software, platforms related to exome / whole genome sequencing. | whole-exome sequencing, archiving, data management, mutation, gene, gene-disease association, exome, whole genome sequencing, genome, sequencing, exome sequencing | is listed by: FORCE11 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157263 | SCR_003224 | SciCrunch Registry | 2026-10-31 12:13:20 | 0 | ||||||||
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XORRO Resource Report Resource Website 1+ mentions |
XORRO (RRID:SCR_003181) | XORRO | software resource | Efficient paired-read overlap software program for use with Illumina sequencing. | illumina, next-generation sequencing |
is listed by: OMICtools has parent organization: SourceForge |
Free, Available for download, Freely available | OMICS_01569 | SCR_003181 | SciCrunch Registry | XORRO: Rapid Paired-End Read Overlapper | 2026-10-31 12:13:19 | 1 | |||||||
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GNU Image Manipulation Program Resource Report Resource Website 1000+ mentions |
GNU Image Manipulation Program (RRID:SCR_003182) | GIMP | data processing software, image analysis software, image processing software, software application, software resource | A software application for such tasks as photo retouching, image composition and image authoring. It has many capabilities such as it can be used as a simple paint program, an expert quality photo retouching program, an online batch processing system, a mass production image renderer, an image format converter, etc. GIMP is expandable and extensible and designed to be augmented with plug-ins and extensions. The advanced scripting interface allows everything from the simplest task to the most complex image manipulation procedures to be easily scripted. | image analysis, image processing, digital image, free software, GIMP, image processing, open source software, Photoshop | PMID:19457798 | Free, Available for download, Freely available | nif-0000-30615 | SCR_003182 | SciCrunch Registry | 2026-10-31 12:13:21 | 1747 | ||||||||
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PredictNLS Resource Report Resource Website 10+ mentions |
PredictNLS (RRID:SCR_003133) | PredictNLS | analysis service resource, data analysis service, production service resource, service resource, software resource | Software automated tool for analysis and determination of Nuclear Localization Signals (NLS). Predicts that your protein is nuclear or finds out whether your potential NLS is found in our database. The program also compiles statistics on the number of nuclear/non-nuclear proteins in which your potential NLS is found. Finally, proteins with similar NLS motifs are reported, and the experimental paper describing the particular NLS are given. | bio.tools, nuclear localization signal, protein, protein sequence |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: ROSTLAB has parent organization: Columbia University; New York; USA |
DOI:10.1093/embo-reports/kvd092 | Free, Available for download, Freely available | nif-0000-31416, OMICS_01633, SCR_008553, biotools:predictnls | https://www.rdocumentation.org/packages/propagate/versions/1.0-4/topics/predictNLS | SCR_003133 | SciCrunch Registry | Prediction and Analysis of Nuclear Localization Signals | 2026-10-31 12:13:20 | 33 | |||||
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Ascomycete Phenotype Ontology Resource Report Resource Website |
Ascomycete Phenotype Ontology (RRID:SCR_003254) | APO | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the phenotypes of Ascomycete fungi. | obo, phenotype |
is listed by: BioPortal is listed by: OBO has parent organization: SGD |
Free, Freely available | nlx_157321 | http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/ascomycete_phenotype.obo | SCR_003254 | SciCrunch Registry | 2026-10-31 12:13:21 | 0 | |||||||
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Strong Star Resource Report Resource Website |
Strong Star (RRID:SCR_003132) | STRONG STAR | clinical trial, data or information resource, disease-related portal, portal, research forum portal, topical portal | A multidisciplinary and multi-institutional research consortium to develop and evaluate the most effective early interventions possible for the detection, prevention, and treatment of combatrelated posttraumatic stress disorder (PTSD) in activeduty military personnel and recently discharged veterans. Complementary investigations are focused on the root causes of PTSD, including biological factors that influence PTSD susceptibility and recovery; the influence of comorbid physical and psychological ailments; and the interaction of cognitive-behavioral therapies and pharmacologic treatments. The full cohort of STRONG STAR trials include: Treatment Studies, Biological Studies, Epidemiological Studies, and Preclinical Studies. STRONG STAR is currently conducting three clinical treatment trials at Carl R. Darnall Army Medical Center (CRDAMC). The studies are examining the effectiveness of Cognitive Processing Therapy (CPT), Prolonged Exposure Therapy (PE) and Cognitive Behavioral Therapy for Insomnia (CBTi) with active duty service members. Treatments are offered in individual, group, and online formats, and last from two to eight weeks. Study participants must be active duty service members who will remain in the Ft Hood area for at least 34 months to complete initial assessments and treatment programs. Referrals to the treatment studies can be made through a behavioral health provider or through selfreferral., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | treatment, military, cognitive processing therapy, prolonged exposure therapy, cognitive behavioral therapy, detection, prevention, diagnosis, active duty, veteran, clinical, pharmacologic treatment, preclinical, combat-related post-traumatic stress disorder | has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA | Post-Traumatic Stress Disorder, Insomnia | United States Department of Defense | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156784 | SCR_003132 | SciCrunch Registry | South Texas Research Organizational Network Guiding Studies on Trauma and Resilience | 2026-10-31 12:13:19 | 0 | |||||
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LUMPY Resource Report Resource Website 100+ mentions |
LUMPY (RRID:SCR_003253) | data analysis software, data processing software, simulation software, software application, software resource, standalone software | Software package as probabilistic framework for structural variant discovery. Capable of integrating any number of SV detection signals including those generated from read alignments or prior evidence. Simplified wrapper for standard analyses, LUMPY Express, can also be executed. | probabilistic, framework, structural, variant, discovery |
is listed by: OMICtools is listed by: Debian has parent organization: University of Virginia; Virginia; USA |
Burroughs Wellcome Fund Career Award ; NHGRI R01 HG006693; OD DP2 OD006493 |
PMID:24970577 | Free, Available for download, Freely available | OMICS_04674 | https://sources.debian.org/src/lumpy-sv/ | SCR_003253 | SciCrunch Registry | lumpy-sv, LUMPY Express | 2026-10-31 12:13:23 | 499 | |||||
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Beta Cell Genomics Ontology Resource Report Resource Website |
Beta Cell Genomics Ontology (RRID:SCR_003259) | OBI BCGO, BCGO | controlled vocabulary, data or information resource, ontology | An application ontology built for the Beta Cell Genomics database aiming to support database annotation, complicated semantic queries, and automated cell type classification. The ontology is developed using Basic Formal Ontology (BFO) as upper ontology, Ontology for Biomedical Investigations (OBI) as ontology framework and integrated subsets of multiple OBO Foundry (candidate) ontologies. Current the BCGO contains 2383 classes including terms referencing to 24 various OBO Foundry ontologies including CL, CLO, UBERON, GO, PRO, UO, etc. | owl, cell type, classification, ontology, beta cell genomics |
uses: BFO uses: Ontology for Biomedical Investigations is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Information Artifact Ontology has parent organization: Beta Cell Biology Consortium |
Free, Available for download, Freely available | nlx_157324 | https://github.com/obi-bcgo/bcgo | SCR_003259 | SciCrunch Registry | 2026-10-31 12:13:21 | 0 | |||||||
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NovelSeq Resource Report Resource Website |
NovelSeq (RRID:SCR_003136) | NovelSeq | software resource | Software pipeline to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. | sequence, insertion, genome sequencing, genome, next-generation sequencing, illumina, unix, linux, c, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: SPLITREAD has parent organization: Simon Fraser University; British Columbia; Canada has parent organization: SourceForge |
PMID:20385726 | Free, Available for download, Freely available | biotools:novelseq, nlx_156791, OMICS_02164 | https://mybiosoftware.com/novelseq-1-0-2-sequence-insertions-detection.html#google_vignette | SCR_003136 | SciCrunch Registry | NovelSeq: Novel Sequence Insertion Detection | 2026-10-31 12:13:18 | 0 | |||||
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mrCaNaVaR Resource Report Resource Website 10+ mentions |
mrCaNaVaR (RRID:SCR_003135) | mrCaNaVaR | software resource | Copy number caller that analyzes the whole-genome next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | genome, next-generation sequence, duplication, deletion, copy number variant, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: SPLITREAD has parent organization: SourceForge |
Free, Freely available | OMICS_02138, nlx_156790, biotools:mrcanavar | https://bio.tools/mrcanavar | SCR_003135 | SciCrunch Registry | mrCaNaVaR - micro-read Copy Number Variant Regions, micro-read Copy Number Variant Regions | 2026-10-31 12:13:19 | 16 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
