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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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neMESYS UserInterface Resource Report Resource Website |
neMESYS UserInterface (RRID:SCR_014793) | data acquisition software, data processing software, software application, software resource | Software used to configure and control up to 32 neMESYS syringe pumps. Its features include automatic detection of connected dosing units, graphical display of syringe size, syringe level and valve position, configurable SI units for volumes and flow rates, and real-time display of all current values like flow rate, syringe fill level or dispensed volume. | nemesys, user interface, syringe, system control software | Commercially available | SCR_014793 | nemesys UserInterface, nemesys User Interface | 2026-09-12 12:58:21 | 0 | ||||||||||
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Hierarchical Clustering Resource Report Resource Website 1+ mentions |
Hierarchical Clustering (RRID:SCR_014673) | data analysis software, data processing software, software application, software resource, source code | R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method. | statistical analysis, statistical analysis package, r, r package, data analysis, software, cluster, hierarchical, dissimilarity, clustering method, metabolomics | is listed by: Metabolomics Workbench | Acknowledgement requested | SCR_014673 | R: Hierarchical Clustering, R - Hierarchical Clustering | 2026-09-12 12:58:20 | 4 | |||||||||
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Zeitzeiger Resource Report Resource Website 10+ mentions |
Zeitzeiger (RRID:SCR_014791) | data acquisition software, data processing software, software application, software resource | R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed. | r, data acquisition software, rhythm, behavior, predict, oscillatory system, high dimensional data, regularized supervised learning | Available for download | SCR_014791 | ZeitZeiger | 2026-09-12 12:58:21 | 13 | ||||||||||
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Principal Components Analysis Resource Report Resource Website 10+ mentions |
Principal Components Analysis (RRID:SCR_014676) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp. | statistical analysis, statistical analysis package, r, r package, principal component analysis, data matrix, prcomp, metabolomics | is listed by: Metabolomics Workbench | SCR_014676 | 2026-09-12 12:58:20 | 17 | |||||||||||
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La Jolla Institute for Immunology Bioinformatics Core Facility Resource Report Resource Website |
La Jolla Institute for Immunology Bioinformatics Core Facility (RRID:SCR_014831) | access service resource, core facility, service resource | Core Facility provides support for short or long-term projects requiring expertise the analysis of biological datasets. The services provided include the analysis of large-scale datasets (e.g. next-gen sequencing data, microarrays, etc.), the development of customized databases and reusable analysis pipelines, guidance on experimental design, support with technical sections of manuscripts and grants, and training on analysis software packages. All services are charged at our hourly rate. | immunology, core facility, la jolla, bioinformatics, core facility, data analysis, pipeline development, technical, statistical, review, training | has parent organization: La Jolla Institute for Immunology | Available to external user | http://livesite.liai.org/pages/core_bioinformatics | SCR_014831 | , Institute for Immunology, La Jolla Institute; La Jolla Institute for Allergy and Immunology Bioinformatics Core;La Jolla Institute for Allergy and Immunology Bioinformatics Core Facility | 2026-09-12 12:58:22 | 0 | ||||||||
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Linear Discriminant Analysis Resource Report Resource Website |
Linear Discriminant Analysis (RRID:SCR_014675) | data analysis software, data processing software, software application, software resource, source code | R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular. | statistical analysis, statistical analysis package, r, r package, linear disciminant analysis, covariance, matrix, linear discriminant analysis, data analysis software, metabolomics | is listed by: Metabolomics Workbench | SCR_014675 | 2026-09-12 12:58:20 | 0 | |||||||||||
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Xperiment Resource Report Resource Website 1+ mentions |
Xperiment (RRID:SCR_014712) | data acquisition software, data analysis software, data processing software, mobile application, software application, software resource | Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales. | mobile, application, portable, behavioral science, online, social science | Free for the academic community, Fee for commercial organization | SCR_014712 | 2026-09-12 12:58:21 | 3 | |||||||||||
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Association of the Scientific Medical Societies in Germany Resource Report Resource Website |
Association of the Scientific Medical Societies in Germany (RRID:SCR_014716) | AWMF | group | An association of various medical entities in Germany. The organization advises on matters and tasks of fundamental and interdisciplinary interest in medicine, develops recommendations and resolutions and represents them at the institutions occupied with such tasks, such as research strategies, education, and postgraduate training. | germany, medicine, interdisciplinary, research | SCR_014716 | Arbeitsgemeinschaft der Wissenschaftlichen Medizinischen Fachgesellschaften | 2026-09-12 12:58:21 | 0 | ||||||||||
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DeviumWeb Resource Report Resource Website 10+ mentions |
DeviumWeb (RRID:SCR_014683) | data analysis software, data processing software, data visualization software, software application, software resource, software toolkit | A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis. | metabolomics, metabolomics tool, data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis, visualization, principal component analysis, predictive modeling, biochemical pathway analysis | is listed by: Metabolomics Workbench | Subscription required, 30-day demo available | http://dgrapov.github.io/DeviumWeb/ | SCR_014683 | 2026-09-12 12:58:20 | 12 | |||||||||
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Salk Institute Behavior Testing Core Facility Resource Report Resource Website |
Salk Institute Behavior Testing Core Facility (RRID:SCR_014840) | BTC | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th,2024. Core facility that provides the resources to investigate sensory, motor and complex behavioral testing in rat and mouse models. The facility offers standard neurobehavioral tests, customized test batteries, training for independent use of the equipment, data interpretation and anlaysis. | core facility, la jolla, behavioral, behavior, sensory, motor, neurobehavioral, test, rat, mouse | Salk Institute Behavior Testing Core Facility ; NINDS Neuroscience Core Grant |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014840 | 2026-09-12 12:58:22 | 0 | |||||||||
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Leica: SP8 DIVE multi photon microscope Resource Report Resource Website 1+ mentions |
Leica: SP8 DIVE multi photon microscope (RRID:SCR_018852) | SP8 DIVE | instrument resource | Multiphoton confocal microscope with spectrally tunable detection. Equipped with 4Tune, tunable, non descanned detection unit. | Multiphoton microscope, microscope, confocal microscope, Leica microscope, 4Tune, tunable, instrument, equipment | is listed by: USEDit | Restricted | https://www.uu.se/download/18.3e997b3218a92fdae6a1c553/1695042166717/c_600184-l_1-k_leica-sp8-dive-manual---biovis.pdf | SCR_018852 | SP8 Deep In Vivo Explorer | 2026-09-12 12:59:06 | 2 | |||||||
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TIMER Resource Report Resource Website 1000+ mentions |
TIMER (RRID:SCR_018737) | TIMER | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server for comprehensive analysis of tumor infiltrating immune cells. Web tool for systematical analysis of immune infiltrates across diverse cancer types. Allows users to input function specific parameters, with resulting figures dynamically displayed to access tumor immunological, clinical, and genomic features. | Tumor, tumor infiltrating immune cell, immune cell, cell, analysis, cancer cell, cancer type, tumor immunological feature, tumor genomic feature, display | Dana-Farber Cancer Institute ; National Natural Science Foundation of China ; NCI CA180980 |
PMID:29092952 | Free, Freely available | SCR_018737 | Tumor IMmune Estimation Resource | 2026-09-12 12:59:05 | 3010 | |||||||
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Imspector Resource Report Resource Website 50+ mentions |
Imspector (RRID:SCR_018863) | data analysis software, data processing software, software application, software resource | Software tool for real time analysis and data visualization. Software system for experimental control and quantitative data analysis in microscopy and spectroscopy.Integration of data processing and acquisition allows real time analysis and visualization of experimental results. | Data analysis, real time data, visualization, quantitative analysis, microscopy, spectroscopy | Free, Freely available | https://github.com/AbberiorInstruments/ImspectorDocs/blob/master/docs/intro.rst, https://imspector.abberior-instruments.com/ | SCR_018863 | 2026-09-12 12:59:06 | 85 | ||||||||||
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Repetier Host Resource Report Resource Website 10+ mentions |
Repetier Host (RRID:SCR_018901) | 3d visualization software, data processing software, data visualization software, software application, software resource | Open source 3D printing software which supports multi part printing and has slicers. | 3D printing, multi part printing support, slicer, data visualization, 3D visualization | Free, Available for download, Freely available | SCR_018901 | Repetier-Host | 2026-09-12 12:59:07 | 41 | ||||||||||
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Sutter: Movable Objective Microscope Resource Report Resource Website 1+ mentions |
Sutter: Movable Objective Microscope (RRID:SCR_018860) | MOM | instrument resource | Two photon microscope capable of imaging deep within living specimens when combined with Ti:Sapphire Laser. Provides 3D objective movement and rotation allowing specimen to remain stationary. | Sutter Instruments, two photon microscope, imaging, living specimen, 3D objective movement, 3D objective rotation, stationary speciment, custom design, instrument, equipment, microscope | is listed by: USEDit | Restricted. | SCR_018860 | Movable Objective Microscope (MOM), Sutter MOM | 2026-09-12 12:59:06 | 5 | ||||||||
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TRACESPipe Resource Report Resource Website 1+ mentions |
TRACESPipe (RRID:SCR_018831) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tool as hybrid pipeline for reconstruction and analysis of viral and host genomes at multi-organ level. Pipeline for identification, assembly, and analysis of viral genomes, that combine DNA sequence data from multiple organs. Cooperation between compression based prediction, sequence alignment, and de-novo assembly. Provides transmission and storage of data. | Hybrid pipeline, genome reconstruction, genome analysis, viral genome, host genome, multi organ sequencing, multi organ level, DNA sequence data, multiple organ data, bio.tools |
is listed by: bio.tools is listed by: Debian |
DOI:10.5524/100771 | Free, Freely available | biotools:tracespipe | http://dx.doi.org/10.5524/100771, https://bio.tools/tracespipe | SCR_018831 | 2026-09-12 12:59:06 | 2 | |||||||
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Simple Assignment of Spots to Surfaces Resource Report Resource Website 1+ mentions |
Simple Assignment of Spots to Surfaces (RRID:SCR_018797) | SASS | data analysis software, data processing software, software application, software resource | Software tool as custom analysis code combining single-cell traces and spot detection from live imaging movies and using Imaris output. | Custom analysis, single cell trace, spot detection, live imaging movie, assign spots, Imaris detection, expression domain, cell distance |
uses: Imaris has parent organization: University of Manchester; Manchester; United Kingdom |
DOI:10.1101/837179 | Free, Available for download, Freely available | SCR_018797 | 2026-09-12 12:59:06 | 7 | ||||||||
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Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled Resource Report Resource Website |
Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled (RRID:SCR_018834) | instrument resource | Volume Controlled Ventilator delivers desired tidal volume to animal by precisely controlling stroke of piston. Since actual stroke length may be modified for given stroke, sigh breaths are supported. | Volume controlled ventilator, ventilator, tidal volume delivery, piston stroke control, instrument, equipment | is listed by: USEDit | https://www.harvardapparatus.com/media/harvard/pdf/Inspira_557058_9.pdf | SCR_018834 | Volume Controlled, Inspira Advanced Safety Ventilator | 2026-09-12 12:59:06 | 0 | |||||||||
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ADInstruments: PowerLab/4SP acquisition system Resource Report Resource Website 10+ mentions |
ADInstruments: PowerLab/4SP acquisition system (RRID:SCR_018833) | instrument resource | Integrated system of hardware and software designed to record, display, and analyse experimental data. Consists of PowerLab recording unit and possible ancillary devices, software that run on computer to which PowerLab is connected. PowerLab/4SP has four inputs for recording external signals. | Record data, display data, analyse experimental data, recording unit, integrated system, ADInstruments | Restricted | https://m-cdn.adinstruments.com/owners-guides/PowerLab%20SP%20Series%20OG.pdf | SCR_018833 | PowerLab/4SP | 2026-09-12 12:59:06 | 10 | |||||||||
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Millar: PCU-2000 Pressure Control Unit with Patient Isolation Resource Report Resource Website 1+ mentions |
Millar: PCU-2000 Pressure Control Unit with Patient Isolation (RRID:SCR_018840) | instrument resource | Pressure Control Unit is two channel, patient isolated, line powered bridge amplifier for connecting one or two single sensor Millar Mikro-Tip catheters to clinical patient monitor or standalone data acquisition system. Provides built in ridge excitation eliminating need for separate bridge amplifier. Analog output signal level of 1V/100 mmHg is compatible with most pressure monitors and data acquisition systems. In line power supply adapts automatically to line voltages from 100 to 240 volts AC. | Millar, PCU-2000, pressure control unit, patient isolation, amplifier, clinical patient monitor, catherer connector, equipment, instrument | is listed by: USEDit | Restricted | SCR_018892 | https://www.artisantg.com/Scientific/75461-1/Millar-PCU-2000-Dual-Channel-Pressure-Control-Unit-With-Patient-Isolation, https://www.artisantg.com/info/Millar_PCU_2000_Manual.pdf | SCR_018840 | PCU-2000 Dual Channel Pressure Control Unit, PCU-2000 Pressure Control Unit | 2026-09-12 12:59:06 | 1 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
