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http://www.cetoni.de/english/products/software/nemesys-userinterface.html

Software used to configure and control up to 32 neMESYS syringe pumps. Its features include automatic detection of connected dosing units, graphical display of syringe size, syringe level and valve position, configurable SI units for volumes and flow rates, and real-time display of all current values like flow rate, syringe fill level or dispensed volume.

Proper citation: neMESYS UserInterface (RRID:SCR_014793) Copy   

•   Source: SciCrunch Registry

http://stat.ethz.ch/R-manual/R-patched/library/stats/html/hclust.html

R documentation for hierarchical cluster analysis on a set of dissimilarities for n objects. Each object is assigned to its own cluster, which an algorithm proceeds through iteratively. Two of the most similar clusters are joined at each stage until there is a single cluster. Distances between clusters are recomputed at each stage by the Lance–Williams dissimilarity update formula according to the particular clustering method being used. Clustering methods include: Ward's minimum variance method, complete linkage method, and single linkage method.

Proper citation: Hierarchical Clustering (RRID:SCR_014673) Copy   

•   Source: SciCrunch Registry

https://github.com/jakejh/zeitzeiger

R package for regularized supervised learning on high-dimensional data from an oscillatory system. Zeitzeiger can quantify rhythmic behavior, make accurate predictions, identify major patterns and important features, and detect when the oscillator is perturbed.

Proper citation: Zeitzeiger (RRID:SCR_014791) Copy   

•   Source: SciCrunch Registry

http://stat.ethz.ch/R-manual/R-patched/library/stats/html/prcomp.html

R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp.

Proper citation: Principal Components Analysis (RRID:SCR_014676) Copy   

•   Source: SciCrunch Registry

http://www.lji.org/faculty-research/scientific-cores/bioinformatics/#overview

Core Facility provides support for short or long-term projects requiring expertise the analysis of biological datasets. The services provided include the analysis of large-scale datasets (e.g. next-gen sequencing data, microarrays, etc.), the development of customized databases and reusable analysis pipelines, guidance on experimental design, support with technical sections of manuscripts and grants, and training on analysis software packages. All services are charged at our hourly rate.

Proper citation: La Jolla Institute for Immunology Bioinformatics Core Facility (RRID:SCR_014831) Copy   

•   Source: SciCrunch Registry

http://stat.ethz.ch/R-manual/R-devel/library/MASS/html/lda.html

R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular.

Proper citation: Linear Discriminant Analysis (RRID:SCR_014675) Copy   

•   Source: SciCrunch Registry

http://www.xperiment.mobi/

Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales.

Proper citation: Xperiment (RRID:SCR_014712) Copy   

•   Source: SciCrunch Registry

http://www.awmf.org/en

An association of various medical entities in Germany. The organization advises on matters and tasks of fundamental and interdisciplinary interest in medicine, develops recommendations and resolutions and represents them at the institutions occupied with such tasks, such as research strategies, education, and postgraduate training.

Proper citation: Association of the Scientific Medical Societies in Germany (RRID:SCR_014716) Copy   

•   Source: SciCrunch Registry

https://imdevsoftware.wordpress.com/software/

A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis.

Proper citation: DeviumWeb (RRID:SCR_014683) Copy   

•   Source: SciCrunch Registry

http://www.salk.edu/science/core-facilities/behavior-testing-core/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th,2024. Core facility that provides the resources to investigate sensory, motor and complex behavioral testing in rat and mouse models. The facility offers standard neurobehavioral tests, customized test batteries, training for independent use of the equipment, data interpretation and anlaysis.

Proper citation: Salk Institute Behavior Testing Core Facility (RRID:SCR_014840) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/confocal-microscopes/p/dive/

Multiphoton confocal microscope with spectrally tunable detection. Equipped with 4Tune, tunable, non descanned detection unit.

Proper citation: Leica: SP8 DIVE multi photon microscope (RRID:SCR_018852) Copy   

•   Source: SciCrunch Registry

https://cistrome.shinyapps.io/timer/

Web server for comprehensive analysis of tumor infiltrating immune cells. Web tool for systematical analysis of immune infiltrates across diverse cancer types. Allows users to input function specific parameters, with resulting figures dynamically displayed to access tumor immunological, clinical, and genomic features.

Proper citation: TIMER (RRID:SCR_018737) Copy   

•   Source: SciCrunch Registry

https://imspectordocs.readthedocs.io/en/latest/intro.html

Software tool for real time analysis and data visualization. Software system for experimental control and quantitative data analysis in microscopy and spectroscopy.Integration of data processing and acquisition allows real time analysis and visualization of experimental results.

Proper citation: Imspector (RRID:SCR_018863) Copy   

•   Source: SciCrunch Registry

https://www.repetier.com/

Open source 3D printing software which supports multi part printing and has slicers.

Proper citation: Repetier Host (RRID:SCR_018901) Copy   

•   Source: SciCrunch Registry

https://www.sutter.com/MICROSCOPES/mom.html

Two photon microscope capable of imaging deep within living specimens when combined with Ti:Sapphire Laser. Provides 3D objective movement and rotation allowing specimen to remain stationary.

Proper citation: Sutter: Movable Objective Microscope (RRID:SCR_018860) Copy   

•   Source: SciCrunch Registry

https://github.com/viromelab/tracespipe

Software tool as hybrid pipeline for reconstruction and analysis of viral and host genomes at multi-organ level. Pipeline for identification, assembly, and analysis of viral genomes, that combine DNA sequence data from multiple organs. Cooperation between compression based prediction, sequence alignment, and de-novo assembly. Provides transmission and storage of data.

Proper citation: TRACESPipe (RRID:SCR_018831) Copy   

•   Source: SciCrunch Registry

https://github.com/TMinchington/sass

Software tool as custom analysis code combining single-cell traces and spot detection from live imaging movies and using Imaris output.

Proper citation: Simple Assignment of Spots to Surfaces (RRID:SCR_018797) Copy   

•   Source: SciCrunch Registry

http://www.harvardapparatus.com/media/harvard/pdf/Inspira_557058_9.pdf

Volume Controlled Ventilator delivers desired tidal volume to animal by precisely controlling stroke of piston. Since actual stroke length may be modified for given stroke, sigh breaths are supported.

Proper citation: Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled (RRID:SCR_018834) Copy   

•   Source: SciCrunch Registry

http://m-cdn.adinstruments.com/owners-guides/PowerLab%20SP%20Series%20OG.pdf

Integrated system of hardware and software designed to record, display, and analyse experimental data. Consists of PowerLab recording unit and possible ancillary devices, software that run on computer to which PowerLab is connected. PowerLab/4SP has four inputs for recording external signals.

Proper citation: ADInstruments: PowerLab/4SP acquisition system (RRID:SCR_018833) Copy   

•   Source: SciCrunch Registry

https://millar.com/Clinical/Control-Units-and-Accessories/

Pressure Control Unit is two channel, patient isolated, line powered bridge amplifier for connecting one or two single sensor Millar Mikro-Tip catheters to clinical patient monitor or standalone data acquisition system. Provides built in ridge excitation eliminating need for separate bridge amplifier. Analog output signal level of 1V/100 mmHg is compatible with most pressure monitors and data acquisition systems. In line power supply adapts automatically to line voltages from 100 to 240 volts AC.

Proper citation: Millar: PCU-2000 Pressure Control Unit with Patient Isolation (RRID:SCR_018840) Copy   

•   Source: SciCrunch Registry