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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Free Statistical Software
 
Resource Report
Resource Website
1+ mentions
Free Statistical Software (RRID:SCR_013834) software resource A software registry which offers links to various free statistical software programs for stand-alone computing. The software programs are split into different categories: General Packages, Subset Packages, Curve Fitting and Modeling, Biostatistics and Epidemiology, Surveys, Testing and Measurement, Excel Spreadsheets and Add-ins, Programming Languages and Subroutine Libraries, Scripts and Macros, Miscellaneous, and Other Collections. registry, stand alone computing, statistical software is listed by: Educational Resources in Neuroscience
is related to: Educational Resources in Neuroscience
Free, Public SCR_013834 2026-09-12 12:58:10 3
Collage Authoring Environment
 
Resource Report
Resource Website
1+ mentions
Collage Authoring Environment (RRID:SCR_014008) software resource, web application A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site. web applicaiton, computational experiment, executable paper, collaboration, publication is listed by: Connected Researchers
is related to: Article of the Future
is related to: Connected Researchers
has parent organization: Elsevier
Account required SCR_014008 Collage Authoring Environment for Executable Publications 2026-09-12 12:58:10 2
RunMyCode
 
Resource Report
Resource Website
1+ mentions
RunMyCode (RRID:SCR_014011) data or information resource, database, service resource, storage service resource A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode. database, storage service resource, companion website, code is listed by: Connected Researchers
is related to: Exec&Share
is related to: Exec&Share
is related to: Connected Researchers
Alfred P. Sloan Foundation ;
HEC Paris ;
National Center for Scientific Research ;
University of Orleans ;
COlumbia University
Free, Public, The community can contribute to this resource r3d100010418 SCR_014011 2026-09-12 12:58:10 4
Academic Karma
 
Resource Report
Resource Website
1+ mentions
Academic Karma (RRID:SCR_014017) production service resource, service resource A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work. peer review, peer review management, service resource, prodution service resource uses: ORCID - Open Researcher and Contributor ID
is listed by: Connected Researchers
is related to: Connected Researchers
is related to: ORCID - Open Researcher and Contributor ID
Free, Available to the research community SCR_014017 2026-09-12 12:58:11 1
JournalReviewer
 
Resource Report
Resource Website
1+ mentions
JournalReviewer (RRID:SCR_014014) collaboration tool, data or information resource, database, software resource A database which allows researchers to view and comment on the logistics of scientific journals' review processes. JournalReviewer collects and aggregates feedback from users who have submitted manuscripts to journals in order to provide information for others considering journal submissions. Statistics such as turnaround rate, review length and quality, journal recommendations, and desk reject plausabilities are compiled from commentors' ratings. database, review, journal review, review logistics, collaboration tool is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public, The community can contribute to this resource SCR_014014 2026-09-12 12:58:10 1
Journalysis
 
Resource Report
Resource Website
Journalysis (RRID:SCR_014015) collaboration tool, data or information resource, database, software resource A database where researchers can read and post reviews of publishing experiences with scientific journals. When writing comments, reviewers are adivsed to provide facts where possible, be specific, be honest, check the review, and offer constructive criticism when writing a negative report. Journalysis collates submitted reviews and data for each journal and provides useful summary information (metrics). Authors wanting to find out more about specific journals can search its databases and find the best journal for their next manuscript submission. Journals can use these reviews and metrics to demonstrate high publishing standards, or to improve standards where reviews may be negative. database, review, journal review, review logistics, collaboration tool is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public, The community can contribute to this resource SCR_014015 2026-09-12 12:58:11 0
CMIND PY
 
Resource Report
Resource Website
CMIND PY (RRID:SCR_014097) data processing software, image analysis software, software application, software resource, software toolkit A python toolbox for analysis of MRI images. It relies on calls to a number of widely tested algorithms from the FMRIB software library (FSL) and the advanced normalization tools (ANTS) to provide analysis of simultaneously acquired ASL/BOLD fMRI data. It was developed for analyzing the datasets collected as part of the Cincinnati MR Imaging of NeuroDevelopment (C-MIND) project. python, toolbox, software toolkit, image analysis software, mri uses: FSL
uses: ANTS - Advanced Normalization ToolS
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
Public https://research.cchmc.org/c-mind-db/py-doc/html/ SCR_014097 CMIND-PY 2026-09-12 12:58:12 0
Useful Science
 
Resource Report
Resource Website
Useful Science (RRID:SCR_013968) catalog, data or information resource, database, knowledge environment, portal A collection of concise summaries of scientific articles that link back to the physical article. Users can contribute resources to the site and may choose to provide a summary; if they do not, Useful Science will do so. Summaries are then tagged with the appropriate topic. Topics that relate to everday life such as health, fitness, nutrition, and sleep are the main focus of the site. catalog, knowledge environment resource, summary, layman, lay person is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public, The community can contribute to the resource SCR_013968 2026-09-12 12:58:11 0
Plum Analytics
 
Resource Report
Resource Website
1+ mentions
Plum Analytics (RRID:SCR_014023) data or information resource, service resource A service resource which provides researchers with metrics around usage, captures, social media, citations, and mentions from various online research outlets. Plum Analytics pulls information from reserch outlets such as journal articles, books, videos, presentations, conference proceedings, datasets, and source code. Plum Analytics also collects metrics for labs, departments, and other research groups. PlumX is a product of Plum Analytics. service resource, altmetrics, metrics, is listed by: PLOS Article-Level Metrics
is listed by: Connected Researchers
is related to: Connected Researchers
Available to the research community SCR_014023 2026-09-12 12:58:11 7
PLOS Article-Level Metrics
 
Resource Report
Resource Website
1+ mentions
PLOS Article-Level Metrics (RRID:SCR_014022) PLOS ALMs data or information resource, portal, topical portal A portal which provides access to article level metrics, PLOS news, and videos and presentations. PLOS ALMs provides altmetrics for every article published in PLOS. Researchers can stay up-to-date with their published work and share information about the impact of their publications with collaborators, funders, institutions, and the research community at large. portal, altmetrics, article level metrics, PLOS lists: Plum Analytics
lists: ImpactStory
is listed by: Connected Researchers
Sloan Foundation PMID:19918558 Free, Public SCR_014022 PLOS Article Level Metrics 2026-09-12 12:58:11 1
Residual Variation Intolerance Score (RVIS)
 
Resource Report
Resource Website
1+ mentions
Residual Variation Intolerance Score (RVIS) (RRID:SCR_013850) RVIS data or information resource, narrative resource, standard specification A gene-based score intended to help in the interpretation of human sequence data. The score is designed to rank genes in terms of whether they have more or less common functional genetic variation relative to the genome wide expectation given the amount of apparently neutral variation the gene has. A gene with a positive score has more common functional variation, and a gene with a negative score has less and is referred to as intolerant. gene, score, sequence, interpretation, rank, functional genetic variation is listed by: Columbia University; New York; USA NIH Epi4K Sequencing ;
Bioinformatics and Biostatistics Core U01NS077303
DOI:10.1371/journal.pgen.1003709 SCR_013850 Residual Variation Intolerance Score 2026-09-12 12:58:10 8
Kaggle
 
Resource Report
Resource Website
100+ mentions
Issue
Kaggle (RRID:SCR_013852) people resource A group resource which connects organizations to data scientists who produce accurate predictive models. Kaggle uses competition to incentivize data scientists to create the most accurate and precise predictive models for an organization’s sets of data. The data scientist or team of data scientists who creates the best model is awarded a prize and the organization receives the predictive model. group, data scientist, predictive model, competition, recruitment is used by: Merck
is used by: Mayo Clinic
is listed by: Connected Researchers
is related to: Connected Researchers
SCR_013852 2026-09-12 12:58:10 293
InnoCentive
 
Resource Report
Resource Website
1+ mentions
InnoCentive (RRID:SCR_013851) people resource, software resource A global network group resource which provides crowdsourcing services for “innovation solutions.” InnoCentive utilizes an innovation framework, called Challenge Drive Innovation, which is based on leveraging open innovation and crowdsourcing. Software tools are available for idea management, innovation management, and external crowdsourcing programs and competitions. group, crowdsourcing, Challenge Drive Innovation, software, tools, idea management is used by: Scientific American
is listed by: Connected Researchers
is related to: Connected Researchers
Must pay for resource SCR_013851 2026-09-12 12:58:10 9
SlideShare
 
Resource Report
Resource Website
1+ mentions
SlideShare (RRID:SCR_013818) software resource A collaboration tool which allows users to upload and share presentations, infographics, documents, videos, PDFs, and webinars. Individual slideshows are available for download and are easily uploaded to other websites and blogs. collaboration tool, slideshow, share, presentation, infographic, document, video, PDF, webinar is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public SCR_013818 2026-09-12 12:58:09 9
Wiley Smart Article
 
Resource Report
Resource Website
Wiley Smart Article (RRID:SCR_013817) software resource, web application A web application which provides article tools specifically for the chemistry journals Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, and Journal of Physical Organic Chemistry. The addition of Smart Article to these journals allows researchers to search across all five journals and to index and browse facilities for detailed information on compounds. web application, Wiley, article, tool, Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, Journal of Physical Organic Chemistry is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public SCR_013817 Smart Article 2026-09-12 12:58:09 0
ExPosition Packages
 
Resource Report
Resource Website
1+ mentions
ExPosition Packages (RRID:SCR_014107) data analysis software, data processing software, software application, software resource An R package for descriptive (i.e., fixed-effects) multivariate analysis with singular value decomposition. data analysis software, r package, multivariate analysis, singular value decomposition is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Texas at Dallas; Texas; USA
https://cran.r-project.org/web/packages/ExPosition/index.html SCR_014107 CRAN Package Exposition 2026-09-12 12:58:12 1
PubReader
 
Resource Report
Resource Website
1+ mentions
PubReader (RRID:SCR_013814) software resource, web application A web application which serves as an alternate way to read scientific literature in PubMed Central and Bookshelf. PubReader features an easy-to-read multi-column display, a figure strip for access to figures, and a search function. It is designed especially to support reading on tablets and other smaller devices but is available for reading on laptops and desktops. web application, literature, tablet, mobile device is used by: PubMed Central
is used by: Bookshelf
is listed by: Connected Researchers
is related to: NCBI
is related to: PubMed Central
is related to: Bookshelf
is related to: Connected Researchers
has parent organization: NCBI
NIH ;
NLM ;
United States Department of Health and Human Services ;
U.S. Government
Free, Public SCR_013814 2026-09-12 12:58:09 1
Wiley Anywhere Article
 
Resource Report
Resource Website
Wiley Anywhere Article (RRID:SCR_013816) software resource, web application A web application which enhances online reading of articles from the Wiley Online Library. Wiley Anywhere Article is an alternate HTML version of articles found on the Wiley Online Library that is supported on all desktop, tablet, and mobile devices. Readers have access to sidebar and tray functions which display references, figures, and other important information while keeping their place in the article. web application, article, Wiley Online Library is listed by: Connected Researchers
is related to: Connected Researchers
Free, Public SCR_013816 Anywhere Article 2026-09-12 12:58:09 0
SciLifeLab
 
Resource Report
Resource Website
50+ mentions
SciLifeLab (RRID:SCR_014078) access service resource, analysis service resource, graduate program resource, production service resource, service resource A Swedish national center of research for molecular biosciences with a focus on health and environmental research. Researchers from Sweden can use both the technology and the expertise provided by SciLifeLab. Swedish researchers typically pay only for reagents and other consumables. Users from commercial companies pay the actual costs of the analyses performed. SciLifeLab also provides educational courses, seminars, and programs for PhD students, postdocs, investigators and other employees within all Swedish universities. molecular biosciences, health and environmental research, analysis service resource, graduate program resource, access service resource, sweden has parent organization: Uppsala University; Uppsala; Sweden
has parent organization: Karolinska Institute; Stockholm; Sweden
has parent organization: Royal Institute of Technology; Stockholm; Sweden
has parent organization: Stockholm University; Stockholm; Sweden
is parent organization of: FACS
is parent organization of: Karolinska Institutet Adaptive Immune Receptor Gene Variant Atlas
is parent organization of: SciLifeLab Precision Medicine Portal
Available to the research community, May be specifically for Sweden-based researchers SCR_014078 Science for Life Laboratory 2026-09-12 12:58:12 62
Peptide Synthesis
 
Resource Report
Resource Website
Peptide Synthesis (RRID:SCR_014070) material service resource, production service resource, reagent manufacture, service resource A reagent manufacturer which provides custom peptide APIs and custom peptide synthesis services. These products and services include high throughput peptide library/array synthesis, high quality bulk API peptides, bioactive catalog peptides, and cosmetic peptides. peptide, reagent manufacture, custom Available to the academic community SCR_014070 2026-09-12 12:58:11 0

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