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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Free Statistical Software Resource Report Resource Website 1+ mentions |
Free Statistical Software (RRID:SCR_013834) | software resource | A software registry which offers links to various free statistical software programs for stand-alone computing. The software programs are split into different categories: General Packages, Subset Packages, Curve Fitting and Modeling, Biostatistics and Epidemiology, Surveys, Testing and Measurement, Excel Spreadsheets and Add-ins, Programming Languages and Subroutine Libraries, Scripts and Macros, Miscellaneous, and Other Collections. | registry, stand alone computing, statistical software |
is listed by: Educational Resources in Neuroscience is related to: Educational Resources in Neuroscience |
Free, Public | SCR_013834 | 2026-09-12 12:58:10 | 3 | ||||||||||
|
Collage Authoring Environment Resource Report Resource Website 1+ mentions |
Collage Authoring Environment (RRID:SCR_014008) | software resource, web application | A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site. | web applicaiton, computational experiment, executable paper, collaboration, publication |
is listed by: Connected Researchers is related to: Article of the Future is related to: Connected Researchers has parent organization: Elsevier |
Account required | SCR_014008 | Collage Authoring Environment for Executable Publications | 2026-09-12 12:58:10 | 2 | |||||||||
|
RunMyCode Resource Report Resource Website 1+ mentions |
RunMyCode (RRID:SCR_014011) | data or information resource, database, service resource, storage service resource | A database and storage service resource which allows users to create, view, share, and download information from companion websites. RunMyCode allows users to create companion websites for their scientific publications. Users can share and download computer code and data from companion websites made with RunMyCode. Any software and data format is compatible with RunMyCode. | database, storage service resource, companion website, code |
is listed by: Connected Researchers is related to: Exec&Share is related to: Exec&Share is related to: Connected Researchers |
Alfred P. Sloan Foundation ; HEC Paris ; National Center for Scientific Research ; University of Orleans ; COlumbia University |
Free, Public, The community can contribute to this resource | r3d100010418 | SCR_014011 | 2026-09-12 12:58:10 | 4 | ||||||||
|
Academic Karma Resource Report Resource Website 1+ mentions |
Academic Karma (RRID:SCR_014017) | production service resource, service resource | A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work. | peer review, peer review management, service resource, prodution service resource |
uses: ORCID - Open Researcher and Contributor ID is listed by: Connected Researchers is related to: Connected Researchers is related to: ORCID - Open Researcher and Contributor ID |
Free, Available to the research community | SCR_014017 | 2026-09-12 12:58:11 | 1 | ||||||||||
|
JournalReviewer Resource Report Resource Website 1+ mentions |
JournalReviewer (RRID:SCR_014014) | collaboration tool, data or information resource, database, software resource | A database which allows researchers to view and comment on the logistics of scientific journals' review processes. JournalReviewer collects and aggregates feedback from users who have submitted manuscripts to journals in order to provide information for others considering journal submissions. Statistics such as turnaround rate, review length and quality, journal recommendations, and desk reject plausabilities are compiled from commentors' ratings. | database, review, journal review, review logistics, collaboration tool |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_014014 | 2026-09-12 12:58:10 | 1 | ||||||||||
|
Journalysis Resource Report Resource Website |
Journalysis (RRID:SCR_014015) | collaboration tool, data or information resource, database, software resource | A database where researchers can read and post reviews of publishing experiences with scientific journals. When writing comments, reviewers are adivsed to provide facts where possible, be specific, be honest, check the review, and offer constructive criticism when writing a negative report. Journalysis collates submitted reviews and data for each journal and provides useful summary information (metrics). Authors wanting to find out more about specific journals can search its databases and find the best journal for their next manuscript submission. Journals can use these reviews and metrics to demonstrate high publishing standards, or to improve standards where reviews may be negative. | database, review, journal review, review logistics, collaboration tool |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to this resource | SCR_014015 | 2026-09-12 12:58:11 | 0 | ||||||||||
|
CMIND PY Resource Report Resource Website |
CMIND PY (RRID:SCR_014097) | data processing software, image analysis software, software application, software resource, software toolkit | A python toolbox for analysis of MRI images. It relies on calls to a number of widely tested algorithms from the FMRIB software library (FSL) and the advanced normalization tools (ANTS) to provide analysis of simultaneously acquired ASL/BOLD fMRI data. It was developed for analyzing the datasets collected as part of the Cincinnati MR Imaging of NeuroDevelopment (C-MIND) project. | python, toolbox, software toolkit, image analysis software, mri |
uses: FSL uses: ANTS - Advanced Normalization ToolS is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Public | https://research.cchmc.org/c-mind-db/py-doc/html/ | SCR_014097 | CMIND-PY | 2026-09-12 12:58:12 | 0 | ||||||||
|
Useful Science Resource Report Resource Website |
Useful Science (RRID:SCR_013968) | catalog, data or information resource, database, knowledge environment, portal | A collection of concise summaries of scientific articles that link back to the physical article. Users can contribute resources to the site and may choose to provide a summary; if they do not, Useful Science will do so. Summaries are then tagged with the appropriate topic. Topics that relate to everday life such as health, fitness, nutrition, and sleep are the main focus of the site. | catalog, knowledge environment resource, summary, layman, lay person |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public, The community can contribute to the resource | SCR_013968 | 2026-09-12 12:58:11 | 0 | ||||||||||
|
Plum Analytics Resource Report Resource Website 1+ mentions |
Plum Analytics (RRID:SCR_014023) | data or information resource, service resource | A service resource which provides researchers with metrics around usage, captures, social media, citations, and mentions from various online research outlets. Plum Analytics pulls information from reserch outlets such as journal articles, books, videos, presentations, conference proceedings, datasets, and source code. Plum Analytics also collects metrics for labs, departments, and other research groups. PlumX is a product of Plum Analytics. | service resource, altmetrics, metrics, |
is listed by: PLOS Article-Level Metrics is listed by: Connected Researchers is related to: Connected Researchers |
Available to the research community | SCR_014023 | 2026-09-12 12:58:11 | 7 | ||||||||||
|
PLOS Article-Level Metrics Resource Report Resource Website 1+ mentions |
PLOS Article-Level Metrics (RRID:SCR_014022) | PLOS ALMs | data or information resource, portal, topical portal | A portal which provides access to article level metrics, PLOS news, and videos and presentations. PLOS ALMs provides altmetrics for every article published in PLOS. Researchers can stay up-to-date with their published work and share information about the impact of their publications with collaborators, funders, institutions, and the research community at large. | portal, altmetrics, article level metrics, PLOS |
lists: Plum Analytics lists: ImpactStory is listed by: Connected Researchers |
Sloan Foundation | PMID:19918558 | Free, Public | SCR_014022 | PLOS Article Level Metrics | 2026-09-12 12:58:11 | 1 | ||||||
|
Residual Variation Intolerance Score (RVIS) Resource Report Resource Website 1+ mentions |
Residual Variation Intolerance Score (RVIS) (RRID:SCR_013850) | RVIS | data or information resource, narrative resource, standard specification | A gene-based score intended to help in the interpretation of human sequence data. The score is designed to rank genes in terms of whether they have more or less common functional genetic variation relative to the genome wide expectation given the amount of apparently neutral variation the gene has. A gene with a positive score has more common functional variation, and a gene with a negative score has less and is referred to as intolerant. | gene, score, sequence, interpretation, rank, functional genetic variation | is listed by: Columbia University; New York; USA | NIH Epi4K Sequencing ; Bioinformatics and Biostatistics Core U01NS077303 |
DOI:10.1371/journal.pgen.1003709 | SCR_013850 | Residual Variation Intolerance Score | 2026-09-12 12:58:10 | 8 | |||||||
|
Kaggle Resource Report Resource Website 100+ mentions Issue |
Kaggle (RRID:SCR_013852) | people resource | A group resource which connects organizations to data scientists who produce accurate predictive models. Kaggle uses competition to incentivize data scientists to create the most accurate and precise predictive models for an organization’s sets of data. The data scientist or team of data scientists who creates the best model is awarded a prize and the organization receives the predictive model. | group, data scientist, predictive model, competition, recruitment |
is used by: Merck is used by: Mayo Clinic is listed by: Connected Researchers is related to: Connected Researchers |
SCR_013852 | 2026-09-12 12:58:10 | 293 | |||||||||||
|
InnoCentive Resource Report Resource Website 1+ mentions |
InnoCentive (RRID:SCR_013851) | people resource, software resource | A global network group resource which provides crowdsourcing services for “innovation solutions.” InnoCentive utilizes an innovation framework, called Challenge Drive Innovation, which is based on leveraging open innovation and crowdsourcing. Software tools are available for idea management, innovation management, and external crowdsourcing programs and competitions. | group, crowdsourcing, Challenge Drive Innovation, software, tools, idea management |
is used by: Scientific American is listed by: Connected Researchers is related to: Connected Researchers |
Must pay for resource | SCR_013851 | 2026-09-12 12:58:10 | 9 | ||||||||||
|
SlideShare Resource Report Resource Website 1+ mentions |
SlideShare (RRID:SCR_013818) | software resource | A collaboration tool which allows users to upload and share presentations, infographics, documents, videos, PDFs, and webinars. Individual slideshows are available for download and are easily uploaded to other websites and blogs. | collaboration tool, slideshow, share, presentation, infographic, document, video, PDF, webinar |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013818 | 2026-09-12 12:58:09 | 9 | ||||||||||
|
Wiley Smart Article Resource Report Resource Website |
Wiley Smart Article (RRID:SCR_013817) | software resource, web application | A web application which provides article tools specifically for the chemistry journals Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, and Journal of Physical Organic Chemistry. The addition of Smart Article to these journals allows researchers to search across all five journals and to index and browse facilities for detailed information on compounds. | web application, Wiley, article, tool, Applied Organometallic Chemistry, Chemistry – An Asian Journal, Chirality, Journal of Heterocyclic Chemistry, Journal of Physical Organic Chemistry |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013817 | Smart Article | 2026-09-12 12:58:09 | 0 | |||||||||
|
ExPosition Packages Resource Report Resource Website 1+ mentions |
ExPosition Packages (RRID:SCR_014107) | data analysis software, data processing software, software application, software resource | An R package for descriptive (i.e., fixed-effects) multivariate analysis with singular value decomposition. | data analysis software, r package, multivariate analysis, singular value decomposition |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Texas at Dallas; Texas; USA |
https://cran.r-project.org/web/packages/ExPosition/index.html | SCR_014107 | CRAN Package Exposition | 2026-09-12 12:58:12 | 1 | |||||||||
|
PubReader Resource Report Resource Website 1+ mentions |
PubReader (RRID:SCR_013814) | software resource, web application | A web application which serves as an alternate way to read scientific literature in PubMed Central and Bookshelf. PubReader features an easy-to-read multi-column display, a figure strip for access to figures, and a search function. It is designed especially to support reading on tablets and other smaller devices but is available for reading on laptops and desktops. | web application, literature, tablet, mobile device |
is used by: PubMed Central is used by: Bookshelf is listed by: Connected Researchers is related to: NCBI is related to: PubMed Central is related to: Bookshelf is related to: Connected Researchers has parent organization: NCBI |
NIH ; NLM ; United States Department of Health and Human Services ; U.S. Government |
Free, Public | SCR_013814 | 2026-09-12 12:58:09 | 1 | |||||||||
|
Wiley Anywhere Article Resource Report Resource Website |
Wiley Anywhere Article (RRID:SCR_013816) | software resource, web application | A web application which enhances online reading of articles from the Wiley Online Library. Wiley Anywhere Article is an alternate HTML version of articles found on the Wiley Online Library that is supported on all desktop, tablet, and mobile devices. Readers have access to sidebar and tray functions which display references, figures, and other important information while keeping their place in the article. | web application, article, Wiley Online Library |
is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013816 | Anywhere Article | 2026-09-12 12:58:09 | 0 | |||||||||
|
SciLifeLab Resource Report Resource Website 50+ mentions |
SciLifeLab (RRID:SCR_014078) | access service resource, analysis service resource, graduate program resource, production service resource, service resource | A Swedish national center of research for molecular biosciences with a focus on health and environmental research. Researchers from Sweden can use both the technology and the expertise provided by SciLifeLab. Swedish researchers typically pay only for reagents and other consumables. Users from commercial companies pay the actual costs of the analyses performed. SciLifeLab also provides educational courses, seminars, and programs for PhD students, postdocs, investigators and other employees within all Swedish universities. | molecular biosciences, health and environmental research, analysis service resource, graduate program resource, access service resource, sweden |
has parent organization: Uppsala University; Uppsala; Sweden has parent organization: Karolinska Institute; Stockholm; Sweden has parent organization: Royal Institute of Technology; Stockholm; Sweden has parent organization: Stockholm University; Stockholm; Sweden is parent organization of: FACS is parent organization of: Karolinska Institutet Adaptive Immune Receptor Gene Variant Atlas is parent organization of: SciLifeLab Precision Medicine Portal |
Available to the research community, May be specifically for Sweden-based researchers | SCR_014078 | Science for Life Laboratory | 2026-09-12 12:58:12 | 62 | |||||||||
|
Peptide Synthesis Resource Report Resource Website |
Peptide Synthesis (RRID:SCR_014070) | material service resource, production service resource, reagent manufacture, service resource | A reagent manufacturer which provides custom peptide APIs and custom peptide synthesis services. These products and services include high throughput peptide library/array synthesis, high quality bulk API peptides, bioactive catalog peptides, and cosmetic peptides. | peptide, reagent manufacture, custom | Available to the academic community | SCR_014070 | 2026-09-12 12:58:11 | 0 |
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