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The European large-scale functional genomics in the rat for translational research (EURATRANS) consortium brings together investigators who will use next-generation sequencing technologies to generate genomic, transcriptomic and epigenomic datasets. The goal is to create quantitative metabonomic and proteomic datasets to give significant depth of coverage, at multiple levels, across pathophysiological phenotypes. The aim is to enable insights into disease mechanisms, through an integrative, cross-disciplinary approach to understanding large-scale functional genomic datasets in rats and humans.
Proper citation: European large-scale functional genomics in the rat for translational research (EURATRANS) (RRID:SCR_013697) Copy
http://www.articleofthefuture.com/about
A web application which provides interactive and in depth reading of online scientific articles published in Elsevier. While reading an article, users can access interactive data sources such as Protein Viewer and Google Maps as well as links to references and databases. Prototypes for seven different scientific areas are currently available for more specific research, but all scientific disciplines are represented within Article of the Future.
Proper citation: Article of the Future (RRID:SCR_013812) Copy
A software application that provides visual representations and organization for systematic literature searches. Users can observe trends in scientific literature through graphic visualizations while using keyword searches to find related articles or compare trends within a given graphic. SciCurve also allows users to locate journals which publish literature in users' fields of interest.
Proper citation: SciCurve (RRID:SCR_013778) Copy
A publishing company which aims to produce intellectual content as well as research platforms and intelligence solutions. Elsevier publishes works related to science, health, and technology in physical copies and online. The company also provides integrated technology and analytics which allows users to to interact with, manipulate, share, and extract informant from various resources.
Proper citation: Elsevier (RRID:SCR_013811) Copy
A software application that allows users to add and store research content directly from the web. Users can use the tool to add research content and bibliographic references directly to their Zotero library from their browser. The application stores PDFs, images, audio and video files, and snapshots of web pages on a single searchable interface.
Proper citation: Zotero (RRID:SCR_013784) Copy
https://hp.acschemworx.acs.org
A web application which provides tools to share references and generate bibliographies with colleagues, organize and access references, and track metrics for ACS articles. Articles are automatically synced to user libraries and are accessible from multiple devices.
Proper citation: ACS ChemWorx (RRID:SCR_013785) Copy
The Glycomics by High-throughput Integrated Technologies (GlycoHIT) consortium aims to advance the development of reliable and fast diagnostic tests for the early detection of cancer. By creating high-throughput technologies to analyze altered sugars, or glycobiomarkers, the consortium aims to allow scientists to diagnose different forms of cancer from a simple blood test without the need for biopsy. GlycoHIT will also further develop sugar testing technologies to allow this rapid form of diagnosis to be used in a clinical setting.
Proper citation: Glycomics by High-throughput Integrated Technologies (GLYCOHIT) (RRID:SCR_013708) Copy
The Global Research in Paediatrics (GRiP) consortium focuses on the lack of appropriate testing of pediatric drugs. In particular, most pediatric medications having inadequate information about dosing regimen, dose adjustment and administration. GRiP partners are working to build and maintain an infrastructure matrix, which has the core aim of reducing the current fragmentation of the efforts to study and develop the use of medicine in children. By linking the existing pediatric research networks, GRIP will involve more than 1000 institutions worldwide.
Proper citation: Global Research in Paediatrics (GRIP) (RRID:SCR_013707) Copy
http://www.ncbi.nlm.nih.gov/refseq/rsg/
A data set of defined genomic sequences used as reference standards for well-characterized genes. These standard nucleotide sequences serve as foundations for locating mutations, establishing conventions for numbering exons and introns, and defining the coordinates of other variations. Sequences are aligned to reference chromosomes. RefSeqGene is a subset of NCBI RefSeq.
Proper citation: RefSeqGene (RRID:SCR_013787) Copy
The Fatty Liver: Inhibition of Progression consortium (FLIP) aims to study the mechanisms of progression of liver disease in NAFLD to provide strategies for prevention and therapy. The project is based on the largest European cohort of patients with histologically diagnosed NAFLD, assembled with clinical and epidemiological data, and with biobanks of DNA, frozen liver tissue and serum. The consortium''s efforts span all the steps of the disease for studying cellular mechanisms of progression, with a goal of answering key issues dealing with the interplay of metabolic, inflammatory and fibrotic factors in the initiation and perpetuation of liver injury.
Proper citation: Fatty Liver Inhibition of Progression (FLIP) (RRID:SCR_013702) Copy
http://www.ncbi.nlm.nih.gov/genome/viruses/
A database which provides viral and viroid genome sequence data and resource tools. Al viral genomes are downloadable and a complete RefSeq release of viral and viroid genome sequences are available.
Proper citation: NCBI Viral Genomes (RRID:SCR_013789) Copy
http://fnih.org/work/past-programs/genetic-association-information-network-gain
The Genetic Association Information Network (GAIN) supports a series of Genome-Wide Association Studies (GWAS) designed to identify specific points of DNA variation associated with the occurrence of a particular common disease. Initially focusing on six major common diseases, GAIN focused on combining the results with clinical data to create a significant new resource for genetic researchers.
Proper citation: Genetic Association Information Network (GAIN) (RRID:SCR_013703) Copy
The NeuroML database is a curated relational database that provides for the storage and retrieval of computational neuroscience models expressed in NeuroML, which is an extensible XML-based language for describing complex mathematical models of neurons and neuronal networks. NeuroML models are unique in their modular and multi-scale structure, where subcomponents of models can correspond to neuroscience models. In particular, the NeuroML database allows for efficient searches over the components of models and metadata that are associated with a hierarchical NeuroML model description.
Proper citation: NeuroML Database (RRID:SCR_013705) Copy
http://www.ncbi.nlm.nih.gov/clone/
A database which integrates information about genomic clones and libraries, including sequence data, map positions and distributor information. A clone's standardized name in Clone DB is comprised of its microtiter plate address with plate number row and column, prefixed by the standard library abbreviation, to provide a unique clone name. Libraries with records may be accessed via the genomic or cell-based library browsers.
Proper citation: Clone DB (RRID:SCR_013791) Copy
A biomaterial supply and access service resource which provides a shared resource for coordinated tissue processing and biorepository services. Services include patient identification and informed consent, specimen collection, processing and banking, and annotation of banked specimens and specimen distribution. They provide biospecimen inventory management, services, and equipment. It is a shared resource of Duke University.
Proper citation: Biospecimen Repository and Processing Core (RRID:SCR_013792) Copy
A database which houses human subjects clinical trial data. NDCT currently contains data on 13,409 subjects and has access to data on 100,500 subjects from the NIMH Data Archive. Users can also sign up for news updates and watch video tutorials.
Proper citation: National Database for Clinical Trials related to Mental Illness (RRID:SCR_013795) Copy
https://drive.google.com/file/d/1hBdRU27fsVkioRZb_IY_8BGPwIi_2ipq/view?usp=drivesdk
Automated, high throughput microscale bioreactor system that replicates laboratory scale bioreactor performance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Thermo Fisher: Sartorius: Ambr 15 Cell Culture Generation 2 (RRID:SCR_013797) Copy
Collaborative research network specializing in urological chronic pelvic pain disorders. Project involves conducting research primarily on interstitial cystitis/painful bladder syndrome and chronic prostatitis/chronic pelvic pain syndrome and involves researchers from multiple disciplines. MAPP Network includes researchers with clinical, epidemiological, and basic research expertise.
Proper citation: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain (RRID:SCR_013754) Copy
A software application which contains a collection of biomedical resources and assist in the management resources. Resources consist of clinical trials, publications, abstracts, patents, news and events. Users can search, save, and make notes on publications.
Proper citation: CaptoMe (RRID:SCR_013757) Copy
A web application which provides public access to scientific literature through text and data mining.
Proper citation: ContentMine (RRID:SCR_013760) Copy
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
