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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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IMGT - the international ImMunoGeneTics information system Resource Report Resource Website 500+ mentions |
IMGT - the international ImMunoGeneTics information system (RRID:SCR_012780) | IMGT | analysis service resource, data analysis service, data or information resource, database, portal, production service resource, service resource, topical portal | A high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility complex (MHC) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), MHC superfamily (MhcSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates, serving as the global reference in immunogenetics and immunoinformatics. IMGT provides a common access to sequence, genome and structure Immunogenetics data, based on the concepts of IMGT-ONTOLOGY and on the IMGT Scientific chart rules. IMGT works in close collaboration with EBI (Europe), DDBJ (Japan) and NCBI (USA). IMGT consists of sequence databases, genome database, structure database, and monoclonal antibodies database, Web resources and interactive tools. | immunogenetics, immunoinformatics, immunoglobulin, antibody, t cell receptor, major histocompatibility complex, immunoglobulin superfamily, major histocompatibility complex superfamily, protein, immune system, sequence, genome, structure, monoclonal antibody, gold standard, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: IMGT Repertoire has parent organization: Montpellier 2 University; Montpellier; France is parent organization of: IMGT/LIGM-DB is parent organization of: IMGT/GENE-DB is parent organization of: IMGT-ONTOLOGY is parent organization of: IMGT/V-QUEST is parent organization of: IMGT/HLA |
CNRS ; MESR ; Reseau National des Genopoles ; Region Languedoc-Roussillon ; European Union BIOMED1 BIOCT930038; European Union Biotechnology BIOTECH2 BIO4CT960037; European Union 5th PCRDT Quality of Life and Management of Living Resources QLG2-2000-01287; Agence Nationale de la recherche ANR BIOSYS06_135457; EU ImmunoGrid IST-028069 |
PMID:18978023 | nif-0000-03011, biotools:imgt | https://bio.tools/imgt | http://imgt.cines.fr | SCR_012780 | ImMunoGeneTics Information System, IMGT/LIGM, ImMunoGeneTics | 2026-09-12 12:57:52 | 779 | ||||
|
Krona Resource Report Resource Website 50+ mentions |
Krona (RRID:SCR_012785) | Krona | software resource | Software that allows hierarchical data to be explored with zoomable pie charts. | bio.tools |
is listed by: bio.tools has parent organization: SourceForge |
PMID:21961884 | OMICS_01498, biotools:krona | https://bio.tools/krona | SCR_012785 | Krona - Hierarchical data browser | 2026-09-12 12:57:53 | 97 | ||||||
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U.S. Social Security Administration Resource Report Resource Website 1+ mentions |
U.S. Social Security Administration (RRID:SCR_012905) | SSA | institution | Independent agency of the U.S. federal government that administers Social Security, a social insurance program consisting of retirement, disability, and survivor benefits. | Government granting agency | is parent organization of: New Beneficiary Data System | Crossref funder ID: 100005225, ISNI: 0000 0001 0726 0196, nlx_151831, grid.453277.0, Wikidata: Q2824618 | https://ror.org/04b7xxn32 | SCR_012905 | Social Security Administration, Social Security Administration (SSA) | 2026-09-12 12:57:55 | 6 | |||||||
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Meharry Medical College Resource Report Resource Website |
Meharry Medical College (RRID:SCR_012863) | MMC | university | Founded in 1876, Meharry is a non-profit university in Tennessee. Meharry includes a medical school, dental school, and a graduate school. | undergraduate, graduate, master's, doctoral, phD, institution, university |
is related to: Clinical and Translational Science Awards Consortium is parent organization of: Meharry Endocrine core is parent organization of: Meharry Flow Cytometry and BSL3 Core is parent organization of: Meharry Human Tissue Acquistion and Pathology Core is parent organization of: Meharry Molecular Biology Core Facility is parent organization of: Meharry Morphology Core is parent organization of: Meharry Medical College School of Graduate Studies and Research; Tennessee; USA is parent organization of: Meharry Proteomics Core is parent organization of: Meharry Microarray and Bioinformatics Core is parent organization of: Meharry Medical College Molecular Biology Core Facility is parent organization of: Meharry Medical College Labs and Facilities |
ISNI:0000 0001 0286 752X, nlx_66976, grid.259870.1, Wikidata:Q4026847 | https://ror.org/00k63dq23 | SCR_012863 | Meharry Medical, Meharry, Meharry Medical College | 2026-09-12 12:57:54 | 0 | |||||||
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BEDOPS Resource Report Resource Website 100+ mentions |
BEDOPS (RRID:SCR_012865) | BEDOPS | software resource | A suite of tools to address common questions raised in genomic studies - mostly with regard to overlap and proximity relationships between data sets. |
is listed by: OMICtools is listed by: Debian |
PMID:22576172 DOI:10.1093/bioinformatics/bts277 |
GNU General Public License, v3 | OMICS_00949 | https://sources.debian.org/src/bedops/ | SCR_012865 | BEDOPS: high-performance genomic feature operations | 2026-09-12 12:57:54 | 237 | ||||||
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AASLD - American Association for the Study of Liver Diseases Resource Report Resource Website |
AASLD - American Association for the Study of Liver Diseases (RRID:SCR_012900) | AASLD | data or information resource, portal, topical portal | A non-profit organization of scientists and healthcare professionals committed to preventing and curing liver disease, which runs three journals and an annual meeting. Its mission is to Advance the Science and Practice of Hepatology, Liver Transplantation and Hepatobiliary Surgery, Thereby Promoting Liver Health and Optimal Care of Patients with Liver and Biliary Tract Diseases. AASLD was founded in 1950 by a small group of leading liver specialists (including Hans Popper, Leon Schiff, Fred Hoffbauer, Cecil Watson, Jesse Bollman, and Sheila Sherlock, to name a few) to bring together those who had contributed to the field of hepatology. AASLD has grown to an international society responsible for all aspects of hepatology, and our annual meeting, The Liver Meeting, has grown in attendance from 12 to over 7,000 physicians, surgeons, researchers, and allied health professionals from around the world. AASLD sponsors two to four Single Topic Conferences each year in clinical, basic, hepatitis, or pediatric hepatology. Our two monthly journals, HEPATOLOGY and Liver Transplantation, provide the latest research findings for hepatology and surgery of the liver. AASLD''s membership includes ALL professionals dedicated to hepatobiliary discoveries and patient care. Mentoring, the sharing of knowledge, and dedication to professional growth and development are among the core values of AASLD and its members. | hepatology, liver transplantation, liver, transplantation | is parent organization of: American Liver Foundation | Liver disease | nlx_149391 | SCR_012900 | American Association for the Study of Liver Diseases | 2026-09-12 12:57:55 | 0 | |||||||
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EYE-EEG (combined eye-tracking & EEG) Resource Report Resource Website 10+ mentions |
EYE-EEG (combined eye-tracking & EEG) (RRID:SCR_012903) | EYE-EEG | software resource | A plugin for the open-source MATLAB toolbox EEGLAB developed with the goal to facilitate integrated analyses of electrophysiological and oculomotor data. The plugin parses, imports, and synchronizes simultaneously recorded eye tracking data and adds it as extra channels to the EEG. Saccades and fixations can be imported from the eye tracking raw data or detected with an adaptive velocity-based algorithm. Eye movements are then added as new time-locking events to EEGLAB's event structure, allowing easy saccade- and fixation-related EEG analysis (e.g., fixation-related potentials, FRPs). Alternatively, EEG data can be aligned to stimulus onsets and analyzed according to oculomotor behavior (e.g. pupil size, microsaccades) in a given trial. Saccade-related ICA components can be objectively identified based on their covariance with the electrically independent eye tracker. All functions can be accessed via EEGLAB's GUI or called from the command line. | eeg, meg, electrocorticography, matlab, os independent, eye, electrophysiology, oculomotor, eye tracking device |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Humboldt University of Berlin; Berlin; Germany |
DFG | PMID:21744985 | GNU General Public License | nlx_155755 | http://www.nitrc.org/projects/eye-eeg | SCR_012903 | EYE-EEG: Eye tracking & EEG | 2026-09-12 12:57:55 | 13 | ||||
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GENSCAN Resource Report Resource Website 100+ mentions |
GENSCAN (RRID:SCR_012902) | service resource | Resource out of service. Documented on February 24,2021. | has parent organization: German Cancer Research Center | Resource out of service. Documented on February 24,2021. | nif-0000-30609 | SCR_012902 | GENSCAN | 2026-09-12 12:57:55 | 192 | |||||||||
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Flash Gviewer Resource Report Resource Website 1+ mentions |
Flash Gviewer (RRID:SCR_012870) | Flash GViewer | software resource | Flash GViewer is a customizable Flash movie that can be easily inserted into a web page to display each chromosome in a genome along with the locations of individual features on the chromosomes. It is intended to provide an overview of the genomic locations of a specific set of features - eg. genes and QTLs associated with a specific phenotype, etc. rather than as a way to view all features on the genome. The features can hyperlink out to a detail page to enable to GViewer to be used as a navigation tool. In addition the bands on the chromosomes can link to defineable URL and new region selection sliders can be used to select a specific chromosome region and then link out to a genome browser for higher resolution information. Genome maps for Rat, Mouse, Human and C. elegans are provided but other genome maps can be easily created. Annotation data can be provided as static text files or produced as XML via server scripts. This tool is not GO-specific, but was built for the purpose of viewing GO annotation data. Platform: Online tool | visualization, chromosome, video, gene, qtl, genome, navitgation, phenotype, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Medical College of Wisconsin; Wisconsin; USA |
Free for academic use | nlx_149333 | http://gmod.org/flashgviewer | SCR_012870 | 2026-09-12 12:57:54 | 2 | |||||||
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Southern Illinois University; Illinois; USA Resource Report Resource Website 1+ mentions |
Southern Illinois University; Illinois; USA (RRID:SCR_012873) | SIU | university | Public research university in Carbondale, Illinois. Founded in 1869, SIU is the oldest campus of the Southern Illinois University system. |
is parent organization of: Southern Illinois University School of Medicine; Illinois; USA is parent organization of: The Soybean GBrowse Database |
ISNI:0000 0001 0806 3768, nlx_144047, grid.263856.c, Wikidata:Q1472347 | https://ror.org/049kefs16 | SCR_012873 | SIU: Southern Illinois University, Southern Illinois University | 2026-09-12 12:57:54 | 1 | ||||||||
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Bioconductor mailing list Resource Report Resource Website 1+ mentions |
Bioconductor mailing list (RRID:SCR_012915) | Bioconductor mailing list | data or information resource, feed, listserv, narrative resource | This mailing list is for announcements about Bioconductor and the availability of new code and questions and answers about problems and solutions using Bioconductor. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_01705 | SCR_012915 | 2026-09-12 12:57:55 | 2 | ||||||||||
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NCBI Assembly Archive Viewer Resource Report Resource Website 100+ mentions |
NCBI Assembly Archive Viewer (RRID:SCR_012917) | NCBI Assembly Archive Viewer | data or information resource, data repository, data set, service resource, storage service resource | Database providing information on structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. The Archive links the raw sequence information found in the Trace Archive with assembly information found in publicly available sequence repositories (GenBank/EMBL/DDBJ). | sequence alignment, sequence chromatogram, assembly, virus |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is related to: GenBank is related to: Trace Archive is related to: DNA DataBank of Japan (DDBJ) is related to: European Nucleotide Archive (ENA) |
OMICS_00890, r3d100012688 | http://www.ncbi.nlm.nih.gov/assembly, https://doi.org/10.17616/R31NJMA8 | http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi | SCR_012917 | Assembly Archive Viewer, NCBI Assembly, Assembly | 2026-09-12 12:57:55 | 313 | ||||||
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featureCounts Resource Report Resource Website 10000+ mentions |
featureCounts (RRID:SCR_012919) | featureCounts | software resource | A read summarization program, which counts mapped reads for the genomic features such as genes and exons. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is required by: SL-quant |
PMID:24227677 | biotools:featurecounts, OMICS_01160 | https://bio.tools/featurecounts | SCR_012919 | featureCounts: a universal read summarization program | 2026-09-12 12:57:55 | 14312 | ||||||
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National Institutes of Neurological Disorders and Stroke: Research Funding Resource Report Resource Website |
National Institutes of Neurological Disorders and Stroke: Research Funding (RRID:SCR_012874) | funding resource | Research funding for basic and clinical neuroscience trials to help train investigators and better understand diagnosis, treatment, and prevention of neurological disorders. Funds are allocated by Congress on a yearly basis. | epilepsy, epileptic seizure, funding resource, craniocervical injury, grant, grants, nervous system injury, nervous system trauma, neural stem cell, paralysis agitans, parkinson's, parkinson's disease, parkinson syndrome, seizure disorder, traumatic brain injury, research, funding, clinical, neuroscience, basic, trials | Available to the research community | nif-0000-01869 | SCR_012874 | NINDS Research Funding | 2026-09-12 12:57:54 | 0 | |||||||||
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Netherlands Bioinformatics Centre Resource Report Resource Website 1+ mentions |
Netherlands Bioinformatics Centre (RRID:SCR_012879) | NBIC | institution | A collaborative institute of the bioinformatics groups in the Netherlands that perform cutting-edge research, develop novel tools and support platforms, create an e-science infrastructure and educate the next generations of bioinformaticians. They aim to build and maintain a strong bioinformatics and e-bioscience community that meets the (growing) demand for bioinformatics expertise, infrastructure and personnel in the Dutch life sciences field and provides a stimulating force for advanced research in biology. The NBIC grants aim to support the NBIC projects and (the visibility of) the NBIC community. Therefore, only people working in NBIC partner organizations can apply for sponsoring by NBIC. Positions for postdocs and others are available and there is a yearly conference. |
is related to: Open PHACTS is parent organization of: CoPub is parent organization of: WISECONDOR is parent organization of: PASSion is parent organization of: Concept Web Alliance is parent organization of: NARWHAL |
nif-0000-03485, grid.450192.b, Wikidata: Q6999142 | https://ror.org/01r0k6965 | SCR_012879 | Stichting Netherlands Bioinformatics Center, Stichting Netherlands Bioinformatics Centre, Netherlands Bioinformatics Center | 2026-09-12 12:57:54 | 2 | ||||||||
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BicARE Resource Report Resource Website |
BicARE (RRID:SCR_012881) | BicARE | software resource | Biclustering Analysis and Results Exploration. |
is listed by: OMICtools has parent organization: Bioconductor |
Free | OMICS_01803 | SCR_012881 | 2026-09-12 12:57:54 | 0 | |||||||||
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United States Department of Energy Resource Report Resource Website 50+ mentions |
United States Department of Energy (RRID:SCR_012841) | DOE | institution | The mission of the Department of Energy is to ensure America''s security and prosperity by addressing its energy, environmental, and nuclear challenges through transformative science and technology solutions. Goal 1: Transform our Energy Systems - Catalyze the timely, material, and efficient transformation of the nation''s energy system and secure U.S. leadership in clean energy technologies. Goal 2: The Science and Engineering Enterprise - Maintain a vibrant U.S. effort in science and engineering as a cornerstone of our economic prosperity, with clear leadership in strategic areas. Goal 3: Secure Our Nation - Enhance nuclear security through defense, nonproliferation, and environmental efforts. Goal 4: Management and Operational Excellence - Establish an operational and adaptable framework that combines the best wisdom of all Department stakeholders to maximize mission success. |
is parent organization of: Microbial Genomics Program is parent organization of: Argonne National Laboratory is parent organization of: Brookhaven National Laboratories; New York; USA is parent organization of: Human Genome Project Information |
nlx_86742, grid.85084.31, Wikidata: Q217810, ISNI: 123423717, Crossref funder ID: 100000015 | https://ror.org/01bj3aw27 | SCR_012841 | US Department of Energy, U.S. Department of Energy, Department of Energy, U.S. DOE, US DOE | 2026-09-12 12:57:54 | 74 | ||||||||
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CloudAligner Resource Report Resource Website 1+ mentions |
CloudAligner (RRID:SCR_012962) | CloudAligner | software resource | A map/reduce based application for mapping short reads generated by the next-generation sequencing machines. | matlab, mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:21645377 | GNU General Public License, v3 | OMICS_00656, biotools:cloudaligner | https://bio.tools/cloudaligner | SCR_012962 | 2026-09-12 12:57:56 | 4 | ||||||
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InCroMAP Resource Report Resource Website 10+ mentions |
InCroMAP (RRID:SCR_012964) | InCroMAP | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 5,2023. Integrated analysis of cross-platform microarray and pathway data. | is listed by: OMICtools | PMID:23257199 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00855 | SCR_012964 | 2026-09-12 12:57:56 | 11 | ||||||||
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USAID Resource Report Resource Website 500+ mentions |
USAID (RRID:SCR_012846) | USAID | government granting agency | is parent organization of: DHS Program | SCR_012846 | U.S. Agency for International Development, US Agency for International Development, US AID, USAID from the American people | 2026-09-12 12:57:54 | 521 |
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The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
