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URL: https://github.com/msraredon/Connectome
Proper Citation: Connectome (RRID:SCR_028632)
Description: Software R package for calculation and interactive exploration of cell-cell signaling network topologies contained in single-cell RNA-sequencing data. Used to explore cell-cell connectivity patterns based on ligand and receptor data in heterogeneous single-cell datasets.
Resource Type: software resource, software toolkit, source code
Defining Citation: DOI:10.1101/2021.01.21.427529
Keywords: calculation and interactive exploration of cell-cell signaling network, network topologies, single-cell RNA-sequencing data, explore cell-cell connectivity patterns, ligand and receptor data, heterogeneous single-cell datasets,
Availability: Free, Available for download, Freely available
Resource Name: Connectome
Resource ID: SCR_028632
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
