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URL: https://github.com/Neural-Systems-at-UIO/WebAlign
Proper Citation: WebAlign (RRID:SCR_026758)
Description: Web application for 2D image registration to 3D atlas. Used for user guided affine spatial registration (anchoring) of sectional image data, typically high resolution histological images, to 3D reference atlas space. Can generate user defined cut planes through atlas templates that match orientation of cutting plane of 2D experimental images (atlas maps).
Resource Type: software resource, source code, web application
Defining Citation: DOI:10.3389/fninf.2025.1629388
Keywords: 2D image registration, 3D atlas, affine spatial registration, sectional image data, histological images, 3D reference atlas space,
Funding: H2020-EU FPA 650003
Resource Name: WebAlign
Resource ID: SCR_026758
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
