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URL: https://bioconductor.org/packages/AUCell/
Proper Citation: AUCell (RRID:SCR_021327)
Description: Software R package to identify cells with active gene sets in single cell RNA-seq data. Used for analysis of gene set activity in single cell RNA-seq data.Used to calculate whether critical subset of input gene set is enriched within expressed genes for each cell.
Synonyms: Area Under the Curve
Resource Type: data analysis software, data processing software, software application, software resource, software toolkit
Keywords: Identify cells with active gene sets, single cell RNA-seq data, gene set activity analysis
Availability: Free, Available for download, Freely available
Resource Name: AUCell
Resource ID: SCR_021327
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
