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URL: https://gitlab.com/gernerlab/cytomap/-/wikis/home
Proper Citation: CytoMAP (RRID:SCR_021227)
Description: Software tool as spatial analysis software for whole tissue sections.Utilizes information on cell type and position to phenotype local neighborhoods and reveal how their spatial distribution leads to generation of global tissue architecture.Used to make advanced data analytic techniques accessible for single cell data with position information.
Synonyms: Histo-Cytometric Multidimensional Analysis Pipeline
Resource Type: data analysis software, data analytics software, data processing software, software application, software resource, software toolkit
Defining Citation: PMID:32320656
Keywords: Histo cytometric multidimensional, analysis pipeline, whole tissue sections, spatial analysis, single cell data with position information, phenotype local neighborhoods, global tissue architecture
Funding: NIAID R01 AI076327; NIAID R01 AI134246; NIAID R01 AI134713; NIAID R21 AI142667; NIAID T32 AI10667; NIAID U19 AI135976; NICHD T32 HD007233; NIGMS T32 GM007270; NSF DGE 1762114
Availability: Free, Available for download, Freely available
Resource Name: CytoMAP
Resource ID: SCR_021227
Expand Allhas parent organization |
Washington University School of Medicine in St. Louis; Missouri; USA |
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
