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URL: https://bioconductor.org/packages/fgsea/
Proper Citation: fgsea (RRID:SCR_020938)
Description: Software R package for fast preranked gene set enrichment analysis. Allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.
Synonyms: fast gene set enrichment analysis, Fast Gene Set Enrichment Analysis, FGSEA
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: DOI:10.1101/060012
Keywords: Gene set enrichment analysis, preranked gene set, multiple hypothesis correction, bio.tools
Availability: Free, Available for download, Freely available
Resource Name: fgsea
Resource ID: SCR_020938
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
