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URL: https://www.otago.ac.nz/chatterjee-lab/tools/index.html
Proper Citation: Differential Methylation Analysis Package (RRID:SCR_019148)
Description: Software package for large scale genomic DNA methylation analysis. Filters and processes aligned bisulphite sequenced data to generate comprehensive reference methylomes in different units for any genome. Processes aligned SAM files of multiple samples to provide reliable and statistically significant differentially methylated regions, then relate them to proximal genes and CpG features with reasonable rapidity.
Abbreviations: DMAP
Resource Type: data analysis software, data processing software, software application, software resource, software toolkit
Defining Citation: PMID:24608764
Keywords: Genomic DNA methylation, DNA methylation analysis, bisulphite sequenced data, reference methylomes generation, genome, aligned SAM files processing, differentially methylated regions
Funding: National Centre for Growth and Development and Health Research Council ; New Zealand
Availability: Free, Freely available
Resource Name: Differential Methylation Analysis Package
Resource ID: SCR_019148
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
