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URL: https://github.com/aplbrain/saber
Proper Citation: Scalable Analytics for Brain Exploration Research (RRID:SCR_018812)
Description: Library of containerized tools and workflow deployment system for enabling processing of large neuroimaging datasets. Provides canonical neuroimaging workflows specified in standard workflow language (CWL), integration with workflow execution engine (Airflow), imaging database (bossDB), and parameter database (Datajoint) to deploy workflows at scale, and tools to automate deployment and optimization of neuroimaging pipelines.
Abbreviations: SABER, saber
Resource Type: data processing software, software application, software library, software resource, software toolkit, workflow software
Defining Citation: DOI:10.1101/615161v1.full
Keywords: Running containerized workflow, large neuroimaging datasets, canonical neuroimaging workflow, neuroimaging pipeline deployment, neuroimaging pipeline optimization
Funding: NIMH R24 MH114799
Availability: Free, Available for download, Freely available
Resource Name: Scalable Analytics for Brain Exploration Research
Resource ID: SCR_018812
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
