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URL: https://github.com/mrc-ide/PhyDyn
Proper Citation: PhyDyn (RRID:SCR_018544)
Description: Sofware package for performing Bayesian phylogenetic inference under models that deal with structured populations with complex population dynamics. Enables simultaneous estimation of epidemiological parameters and pathogen phylogenies. Epidemiological modelling in BEAST.
Resource Type: simulation software, software application, software resource
Defining Citation: PMID:30422979
Keywords: Bayesian phylogenetic inference, epidemiological modelling, epidemiological parameter estimation, pathogen phylogeny estimation
Funding: MRC Centre for Global Infectious Disease Analysis ; NIGMS U01 GM110749
Availability: Free, Available for download, Freely available
Resource Name: PhyDyn
Resource ID: SCR_018544
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
