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URL: https://bioconductor.org/packages/TCGAbiolinks/
Proper Citation: TCGAbiolinks (RRID:SCR_017683)
Description: Software R Bioconductor package for integrative analysis with TCGA data.TCGAbiolinks is able to access National Cancer Institute Genomic Data Commons thorough its GDC Application Programming Interface to search, download and prepare relevant data for analysis in R.
Synonyms: Cancer Genome Atlas (TCGA) biolinks
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:26704973, DOI:10.12688/f1000research.8923.2
Keywords: Integrative, analysis, TCGA data, cancer, genome, atlas, genomic, analysis, expression, methylated, region, survival plot, phenotype, tumor, epigenomic, alteration, clinical, molecular, retrival
Funding: BridgeIRIS ; GENGISCAN ; INNOVIRIS ; Region de Bruxelles Capitale ; Brussels ; Belgium ; São Paulo Research Foundation
Availability: Free, Available for download, Freely available
Resource Name: TCGAbiolinks
Resource ID: SCR_017683
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
