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URL: https://github.com/wilkinsonlab/epigenomics_pipeline
Proper Citation: Epigenomics Workflow on Galaxy and Jupyter (RRID:SCR_017544)
Description: Software tool as epigenomics analysis pipeline for analysis of ChIP-Seq and RNA-Seq data using Docker images containing Galaxy and Jupyter.
Synonyms: REA pipeline
Resource Type: data analysis software, data or information resource, data processing software, narrative resource, software application, software resource, training material, workflow
Keywords: Epigenomic, analysis, pipeline, ChIP-Seq, RNA-Seq, data, Galaxy, Jupyter, bio.tools
Funding: Agencia Estatal de Investigación of Spain SEV-2016-0672 (2017-2021)
Availability: Free, Available for download, Freely available
Resource Name: Epigenomics Workflow on Galaxy and Jupyter
Resource ID: SCR_017544
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
