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URL: https://github.com/Teichlab/tracer
Proper Citation: TraCeR (RRID:SCR_016338)
Description: Software application for recovery of T cell receptor (TCR) data from single cell data. Used to reconstruct full-length, paired T cell receptor (TCR) sequences from T lymphocyte single-cell RNA sequence data. Links T cell specificity with functional response by revealing clonal relationships between cells alongside their transcriptional profiles.
Resource Type: data analysis software, data processing software, simulation software, software application, software resource, software toolkit
Defining Citation: PMID:26950746
Keywords: recovery, receptor, single, cell, data, computation, method, reconstruct, sequence, T lymphocyte, RNA, sequence
Funding: European Research Council ; the Lister Institute for Preventative Medicine (S.A.T.)
Availability: Free, Available for download, Freely available
Resource Name: TraCeR
Resource ID: SCR_016338
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
