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URL: https://github.com/katholt/srst2
Proper Citation: Short Read Sequence Typing for Bacterial Pathogens (RRID:SCR_015870)
Description: Software that is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Abbreviations: SRST2
Synonyms: SRST2: Short Read Sequence Typing for Bacterial Pathogens, Short Read Sequence Typing v2
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource, source code
Defining Citation: PMID:25422674
Keywords: genotype analysis, illumina sequence data, mlst database, gene sequence, st, reference gene, short read
Related Condition: infectious disease
Funding: NHMRC of Australia 1043830; NHMRC of Australia 1061409; NHMRC of Australia 1061435; Victorian Life Sciences Computation Initiative (VLSCI) VR0082
Availability: Free, Available for download
Resource Name: Short Read Sequence Typing for Bacterial Pathogens
Resource ID: SCR_015870
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
