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URL: http://www.hgsc.bcm.tmc.edu/content/bovine-genome-project
Proper Citation: Bovine Genome Project (RRID:SCR_008370)
Description: Downloadable files of the bos taurus genome. Draft assemblies available for download as contigs or linearized scaffolds of the genomic sequence of cow, Bos taurus, including the final draft assembly (7.1 coverage) and the two previous assemblies. The genome is sequenced to 6- to 8-fold sequence depth, with high-quality finished sequence in some areas. Accompanying EST and SNP analyses is also included. The bovine genome assembly and analysis and the study of cattle genetic history were published in April 24, 2009 issue of Science. The Human Genome Sequencing Center provides BLAST searches of the genome assemblies, either as contigs or as linearized chromosome sequences. The WGS sequence enriched BAC assemblies and the unassembled reads (sequencing reads that did not end up in the genome assembly) can also be searched by BLAST. Traces are available from the NCBI Trace Archive by using the link in the sidebar or by using NCBI MegaBLAST with a same species or cross species query.
Abbreviations: Bovine Genome Project
Resource Type: analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource
Defining Citation: PMID:19393050
Keywords: bovine, cattle, cow, genome, genotype, reagent, sequencing, blast, genome assembly, contig, linearized chromosome, single nucleotide polymorphism, bac map, expressed sequence tag
Funding: NHGRI ; USDA Agricultural Research Service ; USDA Cooperative State Research Education and Extension Service ; State of Texas ; Genome Canada ; Genome British Columbia ; CSIRO ; Agritech Investments Ltd. New Zealand ; Dairy Insight Inc. New Zealand ; AgResearch Ltd.New Zealand ; Robert J. Kleberg ; Jr. and Helen C. Kleberg Foundation ; National Texas and South Dakota Beef Check-off Funds
Resource Name: Bovine Genome Project
Resource ID: SCR_008370
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
