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URL: http://code.google.com/p/crop-tingchenlab/
Proper Citation: CROP (RRID:SCR_006916)
Description: A clustering tool designed mainly for Metagenomics studies, which clusters 16S rRNA sequences into Operational Taxonomic Units (OTU). By using a Gaussian Mixture model, CROP can automatically determine the best clustering result for 16S rRNA sequences at different phylogenetic levels without setting a hard cutoff threshold as hierarchical clustering does. Yet, at the same time, it is able to manage large datasets and to overcome sequencing errors.
Abbreviations: CROP
Synonyms: CROP: Clustering 16S rRNA For OTU Prediction
Resource Type: software resource
Defining Citation: PMID:21233169
Keywords: cluster, 16s rrna, otu, gaussian mixture, bayesian, mcmc, metagenomics
Resource Name: CROP
Resource ID: SCR_006916
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
