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URL: http://athina.biol.uoa.gr/orienTM/
Proper Citation: orienTM (RRID:SCR_006218)
Description: A computer software that utilizes an initial definition of transmembrane segments to predict the topology of transmembrane proteins from their sequence. It uses position-specific statistical information for amino acid residues which belong to putative non-transmembrane segments derived from a statistical analysis of non-transmembrane regions of membrane proteins stored in the SwissProt database. Its accuracy compares well with that of other popular existing methods.
Abbreviations: orienTM
Synonyms: orienTM - Orientation of TransMembrane proteins
Resource Type: analysis service resource, data analysis service, production service resource, service resource
Defining Citation: PMID:11477216
Keywords: topology, prediction, transmembrane, protein, segment, algorithm, transmembrane protein
Funding: European Union ERBFMRXCT960019
Resource Name: orienTM
Resource ID: SCR_006218
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University of Athens Biophysics and Bioinformatics Laboratory |
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
