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URL: http://www.bioconductor.org/packages/devel/bioc/html/deepSNV.html
Proper Citation: deepSNV (RRID:SCR_006214)
Description: Software package that provides quantitative variant callers for detecting subclonal mutations in ultra-deep (>=100x coverage) sequencing experiments. The algorithm is used for a comparative setup with a control experiment of the same loci and uses a beta-binomial model and a likelihood ratio test to discriminate sequencing errors and subclonal SNVs (single nucleotide variants).
Abbreviations: deepSNV
Synonyms: deepSNV - Detection of subclonal SNVs in deep sequencing experiments
Resource Type: software resource
Defining Citation: PMID:24443148
Keywords: data import, genetic variability, genetics, snp, sequencing, single nucleotide variant, bio.tools
Availability: GNU General Public License, v3
Resource Name: deepSNV
Resource ID: SCR_006214
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
