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URL: http://freesurfer.net/fswiki/HippocampalSubfieldSegmentation
Proper Citation: Segmentation of Hippocampus Subfields (RRID:SCR_005996)
Description: A software package for automatic segmentation of hippocampal subfields in magnetic resonance imges. Given a pair of T1-weighted and T2-weighted images (the latter acquired using a protocol tuned for hippocampus imaging), ASHS will automatically label main subfields of the hippocampus, and some extra-hippocampal structures, using multi-atlas segmentation. The main method is described in the Yushkevich et al. 2011 Neuroimage paper (http://tinyurl.com/cffrp3p). * execution requires: Advanced Normalization Tools, FSL
Abbreviations: ASHS
Synonyms: Automatic Segmentation of Hippocampal Subfields, HippocampalSubfieldSegmentation
Resource Type: data processing software, image analysis software, segmentation software, software application, software resource
Defining Citation: PMID:19405131, PMID:20600984
Keywords: hippocampus, mri, t1-weighted image, t2-weighted image, ca1, ca2, ca3, statistical modeling, magnetic resonance
Availability: GNU General Public License
Resource Name: Segmentation of Hippocampus Subfields
Resource ID: SCR_005996
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
