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URL: http://pipeclip.qbrc.org/
Proper Citation: PIPE-CLIP (RRID:SCR_005820)
Description: A Galaxy framework-based online pipeline for reliable analysis of data generated by three types of CLIP-seq protocols: HITS-CLIP, PAR-CLIP and iCLIP. It provides both data processing and statistical analysis to determine candidate cross-linking regions, which are comparable to those regions identified from the original studies or using existing computational tools., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Abbreviations: PIPE-CLIP
Synonyms: PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis
Resource Type: analysis service resource, data analysis service, production service resource, service resource
Defining Citation: PMID:24451213
Keywords: clip-seq, python, bioinformatics, r, high-thoughput sequencing, rna-binding protein, rna
Availability: THIS RESOURCE IS NO LONGER IN SERVICE
Resource Name: PIPE-CLIP
Resource ID: SCR_005820
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
