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URL: http://bio.math.berkeley.edu/SysCall/
Proper Citation: SysCall (RRID:SCR_005307)
Description: A logistic regression based classifier distinguishing heterozygous sites from systematic errors. Given a list of candidate heterozygous genomic locations and a sam file of sequenced reads SysCall classifies each genomic location as either a heterozygous site or a systematic error and outputs according lists, along with the assigned posterior probabilities.
Abbreviations: SysCall
Synonyms: SysCall - Distinguishing heterozygous sites from systematic errors
Resource Type: software resource
Defining Citation: PMID:22099972
Keywords: high-throughput sequencing
Availability: Acknowledgement requested, Registration required
Resource Name: SysCall
Resource ID: SCR_005307
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
