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URL: http://www.cbcb.umd.edu/software/phymm/
Proper Citation: Phymm and PhymmBL (RRID:SCR_004751)
Description: Software for Phylogenetic Classification of Metagenomic Data with Interpolated Markov Models to taxonomically classify DNA sequences and accurately classify reads as short as 100 bp. PhymmBL, the hybrid classifier included in this distribution which combines analysis from both Phymm and BLAST, produces even higher accuracy.
Abbreviations: Phymm, PhymmBL
Resource Type: software resource
Defining Citation: PMID:19648916, PMID:21527926
Keywords: metagenome, sequence, taxonomy, classification, phylogenetic classification, genome, short read
Funding: NLM R01-LM006845
Availability: Open-source license
Resource Name: Phymm and PhymmBL
Resource ID: SCR_004751
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
