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URL: http://ccb.jhu.edu/software/glimmerhmm/
Proper Citation: GlimmerHMM (RRID:SCR_002654)
Description: A gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM's GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single).
Abbreviations: GlimmerHMM
Synonyms: GlimmerHMM - Eukaryotic Gene-Finding System
Resource Type: software resource, source code
Defining Citation: PMID:15145805
Keywords: gene, hidden markov model
Funding: NIH ; NLM R01-LM06845; NLM R01-LM007938
Availability: Free, Available for download, Freely available
Resource Name: GlimmerHMM
Resource ID: SCR_002654
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
