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URL: https://github.com/srobb1/RelocaTE
Proper Citation: RelocaTE (RRID:SCR_002308)
Description: Software toolkit of a collection of scripts in which short reads (paired or unpaired), a fasta containing the sequences of transposable elements and a reference genome sequence, are the input and the output is a series of files containing the locations of TE insertions in the reference and short reads.
Resource Type: software resource, software toolkit
Defining Citation: PMID:23576519
Keywords: short read, TE insertion, genomic sequencing script, transposable element
Availability: Open source, Free
Resource Name: RelocaTE
Resource ID: SCR_002308
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
