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URL: https://bioconductor.org/packages//2.12/bioc/html/exomeCopy.html
Proper Citation: exomeCopy (RRID:SCR_001276)
Description: Software package for detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.
Abbreviations: exomeCopy
Synonyms: exomeCopy - Copy number variant detection from exome sequencing read depth
Resource Type: software resource
Defining Citation: PMID:23089826
Keywords: copy number variation, genetics, sequencing, exome
Availability: Free, Available for download, Freely available
Resource Name: exomeCopy
Resource ID: SCR_001276
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
The data sets included in this resource are published in Kravitz et al, 2012. Distinct roles for direct and indirect pathway striatal neurons in reinforcement (Nat. Neurosci).
