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Comparative transcriptomics of the nematode gut identifies global shifts in feeding mode and pathogen susceptibility.

James W Lightfoot | Veeren M Chauhan | Jonathan W Aylott | Christian Rödelsperger
BMC research notes | 2016

The nematode Pristionchus pacificus has been established as a model for comparative studies using the well known Caenorhabditis elegans as a reference. Despite their relatedness, previous studies have revealed highly divergent development and a number of morphological differences including the lack of a pharyngal structure, the grinder, used to physically lyse the ingested bacteria in C. elegans.

Pubmed ID: 26944260

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Cuffdiff (tool)

RRID:SCR_001647

Software that estimates expression at transcript-level resolution and controls for variability evident across replicate libraries.

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