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https://github.com/sanworks

Software for a measurement and control system for behavior research, most often used to implement operant (Go/NoGo, 2AFC) tasks. This software controls a hierarchy of hardware modules, each powered by an Arduino-programmable microcontroller.

Proper citation: Bpod (RRID:SCR_015943) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/oortt/

Software Pyton scripts to run computerised task of Reaction Time. Scripts, together with their instructions and scoresheets.Used for assessment of RTs that is freely available, compatible with all operating systems, without license and activation costs, and based on open source software platform.

Proper citation: OORTT (RRID:SCR_022331) Copy   

•   Source: SciCrunch Registry

https://github.com/murthylab/sleap

Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals.

Proper citation: Social LEAP (RRID:SCR_021382) Copy   

•   Source: SciCrunch Registry

https://github.com/sanworks/PulsePal

Software tool as part of Pulse Pal system which allows users to create and trigger software defined trains of voltage pulses with high temporal precision.

Proper citation: Pulse Pal (RRID:SCR_021611) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/spikegadgets/

Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way.

Proper citation: SpikeGadgets (RRID:SCR_021623) Copy   

•   Source: SciCrunch Registry

https://github.com/strawlab/freemovr_engine

Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system.

Proper citation: FreemoVR (RRID:SCR_021601) Copy   

•   Source: SciCrunch Registry

https://github.com/FlySorterLLC

Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE.

Proper citation: Modular Automated Platform for Large Scale Experiments (RRID:SCR_021600) Copy   

•   Source: SciCrunch Registry

https://github.com/amchagas/poke_device_arduino

Software tool as script to test if IR led, IR photodiode, arduino and 3D printed nose poke device work properly. Part of Nose Poke Device system.

Proper citation: poke device arduino (RRID:SCR_021608) Copy   

•   Source: SciCrunch Registry

https://github.com/delcasso/hope

Softwre tool as part of Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project for brain implant.

Proper citation: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology (RRID:SCR_021606) Copy   

•   Source: SciCrunch Registry

https://github.com/NC4Lab/NC4gate

Code for testing and operating NC4gate modules of modular gate system for autonomous control of rodent behavior. Fully customizable gate system that can be used in behavioral experiments involving rodent mazes (T-maze, Y-maze, radial arm, etc.).

Proper citation: NC4gate (RRID:SCR_026445) Copy   

•   Source: SciCrunch Registry

https://github.com/lvrgb777/STPoseNet

Source code for pose recognition model for laboratory mice based on yolov8. Real-time spatiotemporal network model for robust mouse pose estimation.

Proper citation: STPoseNet (RRID:SCR_026834) Copy   

•   Source: SciCrunch Registry

https://github.com/mtu-most/linear-actuator

Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system.

Proper citation: linear actuator (RRID:SCR_021613) Copy   

•   Source: SciCrunch Registry

https://github.com/KravitzLab/ROBucket

Software tool as ROBucket source code.

Proper citation: Rodent Operant Bucket (RRID:SCR_021610) Copy   

•   Source: SciCrunch Registry

https://github.com/jf-lab/chendoscope

Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems.

Proper citation: chendoscope (RRID:SCR_021616) Copy   

•   Source: SciCrunch Registry

https://github.com/jamieboyd/AutoHeadFix

Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system.

Proper citation: AutoHeadFix (RRID:SCR_021617) Copy   

•   Source: SciCrunch Registry

https://github.com/bsbrl/craniobot

Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot.

Proper citation: craniobot (RRID:SCR_021609) Copy   

•   Source: SciCrunch Registry

https://murphylab.med.ubc.ca/automated-homecages/

Software tool as part of Automated Home Cage Functional Imaging system.

Proper citation: Automated Home-Cage Functional Imaging (RRID:SCR_021607) Copy   

•   Source: SciCrunch Registry

https://github.com/dublon/scintillate

Open source graphical viewer for time series calcium imaging evaluation and pre-processing.

Proper citation: Scintillate (RRID:SCR_021531) Copy   

•   Source: SciCrunch Registry

https://github.com/ribeiro-lab/flyPAD-fpga

FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software.

Proper citation: flyPAD (RRID:SCR_021522) Copy   

•   Source: SciCrunch Registry

https://github.com/KaetzelLab

Operant Box code

Proper citation: pyOS-5 (RRID:SCR_022336) Copy   

•   Source: SciCrunch Registry