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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Pain Assessment at Withdrawal Speeds Resource Report Resource Website |
Pain Assessment at Withdrawal Speeds (RRID:SCR_022350) | PAWS | data analysis software, software application, software resource, data processing software | Statistical software platform for automated scoring of pain in mice.Software R package takes paw trajectory data in response to stimulus and provides automated scoring of pain. | OpenBehavior, behavior measurement, freely moving mice, behavioral data analysis, scoring of reflexive paw withdrawal | is listed by: OpenBehavior | DOI:10.7554/eLife.57258 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/paws/ | SCR_022350 | 2026-08-06 09:29:53 | 0 | |||||||
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Simple Behavior Analysis Resource Report Resource Website 10+ mentions |
Simple Behavior Analysis (RRID:SCR_021413) | software resource, data analysis software, software toolkit, data processing software, software application | Open source software toolkit for computer classification of complex social behaviors in experimental animals. | Complex social behaviors classifications, supervised behavioral classifiers development, score behaviors across different background settings, OpenBehavior |
is listed by: OpenBehavior is related to: Simple Behavior Analysis project |
DOI:10.1101/2020.04.19.049452 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/simba/ | SCR_021413 | SimBA | 2026-08-06 09:29:40 | 13 | |||||||
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Mouse Action Recognition System Resource Report Resource Website 1+ mentions |
Mouse Action Recognition System (RRID:SCR_022347) | MARS | data analysis software, software application, software resource, data processing software | Software Python pipeline for automated detection, pose estimation, and behavior classification in socially interacting mice.Used for pose estimation and behavior quantification in pairs of freely behaving mice. | OpenBehavior, behavior measurement, video analysis, real time recording and analysis, pose estimation and behavior quantification, freely behaving mice |
is listed by: OpenBehavior is related to: MARS Developer has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://github.com/neuroethology/MARS | SCR_022347 | 2026-08-06 09:29:53 | 7 | |||||||
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3DOC Resource Report Resource Website |
3DOC (RRID:SCR_021547) | portal, project portal, instrument resource, data or information resource | Project related to animals learned perform action in order to achieve reward. Fully 3D printable chamber able to perform operant conditioning using off-the-shelf, low-cost optical and electronic components, that can be reproduced rigorously in any laboratory equipped with 3D printer. | Instrument, operant conditioning, 3D printable chamber, OpenBehavior | is listed by: OpenBehavior | DOI:10.1523/eneuro.0502-19.2020 | Commercially available | SCR_021547 | 2026-08-06 09:29:43 | 0 | |||||||||
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Pyneal Resource Report Resource Website |
Pyneal (RRID:SCR_022333) | data analysis software, software application, software resource, data processing software | Open source software package to support rt-fMRI via data in formats generated by Siemens, Philips, and GE. Used to support real time functional magnetic resonance imaging. | OpenBehavior, real time functional magnetic resonance imaging | is listed by: OpenBehavior | DOI:10.3389/fnins.2020.00900 | Free, Available for download, Freely available | https://github.com/jeffmacinnes/pyneal | SCR_022333 | 2026-08-06 09:29:52 | 0 | ||||||||
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AutoStereota Resource Report Resource Website 1+ mentions |
AutoStereota (RRID:SCR_022330) | portal, project portal, instrument resource, data or information resource | Automated surgical instrument for brain tissue aspiration.Instrument for microendoscope implantation. Utilizes robotic control of needle connected to vacuum pump to aspirate brain tissue. System consists of robotic surgical instrument built around commercially available stereotaxic instrument and open source MATLAB-based GUI for control. | OpenBehavior, Instrument, brain tissue aspiration, microendoscope implantation | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2018.10.013 | Free, Freely available | https://github.com/liang-bo/AutoStereota | SCR_022330 | 2026-08-06 09:29:53 | 2 | ||||||||
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Pi-based Remote Acquisition Technology for Motion Capture project Resource Report Resource Website |
Pi-based Remote Acquisition Technology for Motion Capture project (RRID:SCR_022325) | PiRATeMC | portal, project portal, instrument resource, data or information resource | Open source video recording system for acquiring video data that is scalable, flexible, and affordable.Utilizes Raspberry Pi (RPi) miniature computer and 8-megapixel Camera Board that allows for greater manipulation of recording parameters. System may be accessed on GitHub. | OpenBehavior, Instrument, behavior measurement, video analysis, realtime recording and analysis, video recording system, acquiring video data, open source recording system |
is listed by: OpenBehavior is related to: Pi-based Remote Acquisition Technology for Motion Capture |
DOI:10.1101/2021.07.23.453577 | Free, Freely available | SCR_022325 | Pi-based Remote Acquisition Technology for Motion Capture | 2026-08-06 09:29:52 | 0 | |||||||
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Raspberry Pi based auditory stimulus generator Resource Report Resource Website |
Raspberry Pi based auditory stimulus generator (RRID:SCR_022343) | portal, project portal, instrument resource, data or information resource | Stimulation system for auditory EEG experiments using Raspberry Pi3 B+ board, HiFiBerry audio card to enhance sound quality and trigger tone latency, and custom Python library to generate auditory stimuli. | OpenBehavior, Instrument, behavior apparatus, auditory stimuli generation for EEG studies | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0524-20.2021 | Free, Freely available | https://github.com/PyOpenProto/PyOpenProto/tree/e-neuro2021 | SCR_022343 | Raspberry Pi based auditory stimulus generator project | 2026-08-06 09:29:53 | 0 | |||||||
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Atlas Based Analysis Resource Report Resource Website |
Atlas Based Analysis (RRID:SCR_022339) | ABA | data analysis software, software application, software resource, data processing software | Software semi automated brain atlas based analysis pipeline for c-Fos immunohistochemical data. Used to analyze c-Fos in multiple brain regions simultaneously. | OpenBehavior, brain atlas based analysis pipeline, brain atlas, c-Fos immunohistochemical data, c-Fos, brain regions, simultaneous analysis, immunohistochemical data | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2020.108982 | Free, Available for download, Freely available | https://github.com/kopeclab/Atlas-Based-Analysis | SCR_022339 | ABA project | 2026-08-06 09:29:53 | 0 | ||||||
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FlyBrainLab Resource Report Resource Website |
FlyBrainLab (RRID:SCR_022337) | software resource, data analysis software, data processing software, data visualization software, software application | Interactive software for visualizing and uncovering function of circuits created from large scale fruit fly brain data. Interactive computing platform for studying function of executable circuits constructed from fruit fly brain data. | OpenBehavior, functional logic in Drosophila brain, fruit fly brain data, 3D exploration and visualization of fruit fly brain data, creation of executable circuits |
is listed by: OpenBehavior has parent organization: Columbia University; New York; USA |
DOI:10.7554/eLife.62362 | Free, Available for download, Freely available | https://github.com/FlyBrainLab/FlyBrainLab, https://flybrainlab.fruitflybrain.org/ | SCR_022337 | 2026-08-06 09:29:53 | 0 | ||||||||
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | data analysis software, software application, software resource, data processing software | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-08-06 09:29:53 | 0 | ||||||||
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Modular LED Displays project Resource Report Resource Website |
Modular LED Displays project (RRID:SCR_022704) | portal, project portal, instrument resource, data or information resource | Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. | Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments |
is listed by: OpenBehavior has parent organization: Howard Hughes Medical Institute |
DOI:10.1101/2022.08.02.502550 | Free, Freely available | https://reiserlab.github.io/Modular-LED-Display/, https://github.com/reiserlab/Modular-LED-Display | SCR_022704 | Modular LED Displays | 2026-08-06 09:29:58 | 0 | |||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data visualization software, software application, software resource, data processing software | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-08-06 09:30:00 | 1 | ||||||||
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PavCA project Resource Report Resource Website |
PavCA project (RRID:SCR_022508) | PavCA | portal, topical portal, data or information resource | Project related to tracking behavior. Used to identify subgroups of individuals that differentially attribute incentive value to food cue. Includes apparatus for studying Pavlovian conditioned approach behavior. Customized rat PavCA chambers are constructed based on modular devices purchased from Med-Associates. Code used to operate equipment and collect data was written using Med-Associates’ MEDSTATE programming language. This program is then loaded into Med-PC V operating program, also created by Med-Associates. | Behavior, behavior analysis, Pavlovian conditioning, apparatus, Pavlovian conditioned approach, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: University at Buffalo; New York; USA |
Free, Freely available | SCR_022508 | Pavlovian Conditioned Approach, PavCA | 2026-08-06 09:29:56 | 0 | ||||||||
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SIPEC Resource Report Resource Website |
SIPEC (RRID:SCR_022364) | SIPEC | data analysis software, software application, software resource, data processing software | Software pipeline for video analysis. Deep learning Swiss knife for behavioral data analysis.Performs segmentation, identification, pose-estimation and classification of complex behaviour. Used for analysis of behavior of multiple animals in complex environments. | OpenBehavior, video analysis, behavioral data analysis |
is listed by: OpenBehavior has parent organization: ETH Zurich; Zurich; Switzerland |
DOI:10.1038/s42256-022-00477-5 | Free, Available for download, Freely available | https://github.com/SIPEC-Animal-Data-Analysis/SIPEC | SCR_022364 | SIPEC project | 2026-08-06 09:29:53 | 0 | ||||||
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Timed pressure control hardware and software for delivery of air mediated distensions in animal models Resource Report Resource Website 1+ mentions |
Timed pressure control hardware and software for delivery of air mediated distensions in animal models (RRID:SCR_022363) | portal, project portal, instrument resource, data or information resource | System uses Arduino microcontroller to control relay module that operates solenoid valve which all sit in 3D printed housing. Solenoid works in conjunction with flowmeter regulator to allow for controlled flow of pressurized air into target. Timing of distensions is controlled via either custom Python based UI, or by triggered TTL pulse.Timed pressure control hardware and software used for delivery of air mediated distensions in animal models. | OpenBehavior, Instrument, behavior apparatus, delivery of air mediated distensions, animal models | is listed by: OpenBehavior | DOI:10.1016/J.OHX.2022.E00271 | Free, Freely available | https://osf.io/rs5p4 | SCR_022363 | Timed pressure control hardware and software for delivery of air mediated distensions in animal models project | 2026-08-06 09:29:53 | 1 | |||||||
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OpenPose Resource Report Resource Website 1+ mentions |
OpenPose (RRID:SCR_022362) | data analysis software, software application, software resource, data processing software | Software tool as multi subject keypoint detection library for real time pose estimation.Used to track behavior of monkeys in natural environments, without disrupting their typical pattern of behavior. Deep learning software system for body, face, hands, and foot estimation in monkeys. | OpenBehavior, tracking limb orientation, behavior measurement, freely moving, realtime recording and analysis, video analysis | is listed by: OpenBehavior | DOI:10.1101/2021.01.28.428726 | Free, Available for download, Freely available | https://github.com/CMU-Perceptual-Computing-Lab/openpose | SCR_022362 | 2026-08-06 09:29:53 | 9 | ||||||||
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TRex Resource Report Resource Website |
TRex (RRID:SCR_022361) | data analysis software, software application, software resource, data processing software | Open source animal tracking software tool. Used to visually track movement of multiple animals at once. | OpenBehavior, animal tracking, visually track movement | is listed by: OpenBehavior | DOI:10.7554/eLife.64000 | https://github.com/mooch443/trex | SCR_022361 | 2026-08-06 09:29:53 | 0 | |||||||||
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DLStream Resource Report Resource Website 1+ mentions |
DLStream (RRID:SCR_022359) | data analysis software, software application, software resource, data processing software | Software tool enables closed loop behavioral experiments using deep learning based markerless, real time posture detection.Closed loop behavioral experiment toolkit using pose estimation of body parts. | OpenBehavior, video analysis, behavioral experiment, pose estimation, body parts | is listed by: OpenBehavior | Projekt DEAL | DOI:10.1038/s42003-021-01654-9 | Free, Available for download, Freely available | https://github.com/SchwarzNeuroconLab/DeepLabStream | SCR_022359 | DeepLabStream | 2026-08-06 09:29:53 | 1 | ||||||
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Variational Embedding of Animal Motion Resource Report Resource Website 1+ mentions |
Variational Embedding of Animal Motion (RRID:SCR_022477) | VAME | data visualization software, software application, software resource, data processing software | Software Python tool to cluster behavioral signals obtained from pose estimation tools. Unsupervised probabilistic deep learning framework capable of finding behavioral motifs in pose estimation data. Capable of augmenting quantitative behavioral analyses of data derived from standard pose-estimation software packages. Written based on core functions from DeepLabCut, and readily works with pose data from that package. Can also work with data from other pose estimation packages such as SLEAP. | OpenBehavior, vame, variational embedding of animal motion, pytorch, pose estimation |
is listed by: OpenBehavior is related to: DeepLabCut is related to: SLEAP, LEAP and MotionMapper project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/vame/ | SCR_022477 | Variational Animal Motion Embedding, VAME: Variational Embedding of Animal Motion | 2026-08-06 09:29:55 | 2 |
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