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http://neurotree.org/neurotree/

An academic genealogy platform that collects information about graduate students and posdoctoral research connections. The Neuroscience Academic Family Tree is a free, volunteer-run website designed to help you track your academic genealogy. Our goal is to collect information about the graduate student and postdoctoral connections between most researchers in the field. :How do I navigate the tree? :There are several ways to wander around Neurotree. The basics are summed up in the commands at the top of each page: :* Tree - Jump to a random node on the tree :* Search - Search for a specific person or people at a specific institution :* Recent additions - List the most recent additions :* Distance - Trace the connection between two people in the tree :* Add person - Add a new person to the tree (and be a good citizen!). You must sign up for an account to make additions. :* Analysis - Learn more amazing facts about neurogenealogy! ... and possibly something about the field of neuroscience.

Proper citation: Neurotree: Academic Family Tree (RRID:SCR_007383) Copy   

•   Source: SciCrunch Registry

http://www.uqam.ca/

A French-language university with an international reputation. Firmly committed to research and creation, it offers more than 300 programs of study.

Proper citation: University of Quebec in Montreal; Quebec; Canada (RRID:SCR_007337) Copy   

•   Source: SciCrunch Registry

http://sourceforge.net/projects/taipan/

A fast hybrid short-read assembly tool.

Proper citation: Taipan (RRID:SCR_007330) Copy   

•   Source: SciCrunch Registry

http://www.bna.org.uk/

The British Neuroscience Association, formerly known as The Brain Research Association, was officially relaunched in 1997, continuing many of the traditions of the BRA but with a professional and revamped style. Membership has increased dramatically since this time, now standing at 2000, and the BNA has increasingly taken a leading role in major events, such as hosting the Second Forum of European Neuroscience in Brighton in June, 2000. The BNA is the largest body representing all aspects of neuroscience from ion channels to whole animal behaviour. The Aims and Objectives of the Association are as follows: 1. To promote on a multidisciplinary basis the study of the development structure and function of the nervous system in health and disease. 2. To promote the dissemination of information to all those interested in the neurosciences and related disciplines by means of lectures, discussions, meetings and reports from time to time obtained from such researchers. 3. To advise as far as possible on issues in neurosciences related to health and disease. 4. To endeavour to increase public awareness and understanding of neuroscience research in health and disease. 5. To assist in the training of neuroscientists and other professionals engaged in neuroscience teaching and research. The BNA achieves these aims as follows: 1. By hosting a national meeting biennially, by publishing the proceedings of that meeting and distributing them to the scientific community. 2. By organising a number of focussed ''One Day symposia'' during the year, contributing to training courses for young neuroscientists and organising public lectures and events . 3. By regularly distributing information by the BNA Newsletter or by the BNA News E-mail Alert facility that can inform members about other relevant events, publications and topical issues. 4. By encouraging attendance at its own national meeting and those to which it is affiliated by awarding bursaries to students and young postdoctoral workers, and facilitating participation in the Society for Neuroscience annual meeting by offering sponsored abstract forms. 5. By awarding graduate and undergraduate prizes, and special awards to senior neuroscientists and to lay people who have contributed significantly through their own charitable work to the success of our discipline. 6. By constantly negotiating special discount prices of relevant books and journals, and by offering free online access to the European Journal of Neuroscience.The BNA is the fastest growing learned society, now boasting more than 2000 members, a rise of more than 40% since its relaunch as the BNA in 1997 from the former Brain Research Association. In addition to discounted journals and books and other occasional ''special offers'', the benefits of membership now include the following: 1. Reduced registration fees (up to 50%) to the National Meeting, and FREE admission to many events throughout the year including ''One Day Symposia'' and The Christmas Symposium. 2. Regular mailing of BNA Bulletin and other relevant items. 3. Regular BNA and FENs Email Alert service. 4. Student prizes, and bursaries for attendance at BNA, FENS and IBRO meetings. 5. Free on-line access to European Journal of Neuroscience. 6. Concessionary (SFN membership rate) registration fees and sponsored abstract forms for Society for Neuroscience annual meeting. 7. Free advertising in the BNA Bulletin and on the BNA Website. 8. Free (automatic) membership of the Federation of European Neuroscience Societies (FENS), the International Brain Research Organisation (IBRO) and the Biosciences Federation (BSF). educational resource; jobs.

Proper citation: British Neuroscience Association (RRID:SCR_007402) Copy   

•   Source: SciCrunch Registry

http://www.autism-society.org/

ASA, the nations leading grassroots autism organization, exists to improve the lives of all affected by autism. We do this by increasing public awareness about the day-to-day issues faced by people on the spectrum, advocating for appropriate services for individuals across the lifespan, and providing the latest information regarding treatment, education, research and advocacy. :Founded in 1965 by Dr. Bernard Rimland, Dr. Ruth Sullivan and many other parents of children with autism, ASA is the leading source of trusted and reliable information about autism. Through its strong chapter network, ASA has spearheaded numerous pieces of state and local legislation, including the 2006 Combating Autism Act, the first federal autism-specific law. ASAs website is one of the most visited websites on autism in the world and its quarterly journal, Autism Advocate, has a broad national readership. ASA also hosts the most comprehensive national conference on autism, attended by 2000 people each year. Our information and referral team, our program staff, and our strong chapter presence serve thousands of families each year who are searching for help in their journey with autism. :ASAs national office is headquartered in Bethesda, Maryland. ASA is a member and chapter organization whos national Board of Directors is composed of democratically elected members and appointed members. We are proud to be one of the few organizations to have members with autism serving as active board directors. ASAs Panel of Professional Advisors sets the standards for our Options Policy that governs our practices, and we are proud to count the top professional experts in autism on our PPA. ASAs Panel of People on the Spectrum of Autism Advisors is a first-of-its-kind advisory panel comprised solely of individuals with autism, who help ASA staff create programs and services that will advocate for the rights of all people with autism to live fulfilling, interdependent lives. :Each year, people with autism, families and professionals volunteer thousands of hours to help ASA achieve its mission of serving all those affected by autism. To each and every one of you, thank you :

Proper citation: Autism Society of America (RRID:SCR_007401) Copy   

•   Source: SciCrunch Registry

http://cmb.gis.a-star.edu.sg/ChIPSeq/paperCCAT.htm

THIS RESOURCE IS OUT OF SERVICE, documented on April 5, 2017, A software package for the analysis of ChIP-seq data with negative control., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: CCAT (RRID:SCR_001843) Copy   

•   Source: SciCrunch Registry

http://compbio.iupui.edu/group/6/pages/alteventfinder

Software tool for deriving data-driven alternative splicing (AS) events from RNA-seq data. It analyses the transcripts built by Cufflinks or Scripture and outputs AS event annotations which is compatible with MISO. It can be used for annotating novel AS events from a well-annotated species such as human. It can also be used for species of which known AS event annotation is not available. The current release (v0.1) supports skipped exon events only.

Proper citation: Alt Event Finder (RRID:SCR_001846) Copy   

•   Source: SciCrunch Registry

http://blog.expressionplot.com/

Software package consisting of a default back end, which prepares raw sequencing or Affymetrix microarray data, and a web-based front end, which offers a biologically centered interface to browse, visualize, and compare different data sets.

Proper citation: ExpressionPlot (RRID:SCR_001904) Copy   

•   Source: SciCrunch Registry

https://urgi.versailles.inra.fr/Tools/S-Mart

Software toolbox that manages your RNA-Seq and ChIP-Seq data and also produces many different plots to visualize your data. It performs several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization. It includes the selection (or the exclusion) of the data that overlaps with a reference set, clustering and comparative analysis. It also provides many ways to visualize data: size of the reads, density on the genome, distance with respect to a reference set, and the correlation of two data sets (with cloud plots). A computer science background is not required to run it through a graphical interface and it can be run on any personal computer, yielding results within an hour for most queries.

Proper citation: S-MART (RRID:SCR_001908) Copy   

•   Source: SciCrunch Registry

http://www.kaist.edu/html/en/index.html

Institute dedicated to research in science and technology in South Korea modeled after a research university.

Proper citation: Korea Advanced Institute of Science and Technology; Daejeon; South Korea (RRID:SCR_001902) Copy   

•   Source: SciCrunch Registry

https://github.com/raphael-group/THetA

An algorithm that estimates the tumor purity and clonal / subclonal copy number aberrations directly from high-throughput DNA sequencing data.

Proper citation: THetA (RRID:SCR_001860) Copy   

•   Source: SciCrunch Registry

http://www.ualberta.ca/

Public research university in Edmonton, Alberta, Canada that offers degree programs in a variety of fields including business, arts, education, engineering, nursing, and medicine.

Proper citation: University of Alberta; Alberta; Canada (RRID:SCR_001853) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/SamSPECTRAL.html

Software that identifies cell population in flow cytometry data. It demonstrates significant advantages in proper identification of populations with non-elliptical shapes, low density populations close to dense ones, minor subpopulations of a major population and rare populations. It samples large data such that spectral clustering is possible while preserving density information in edge weights. More specifically, given a matrix of coordinates as input, SamSPECTRAL first builds the communities to sample the data points. Then, it builds a graph and after weighting the edges by conductance computation, the graph is passed to a classic spectral clustering algorithm to find the spectral clusters. The last stage of SamSPECTRAL is to combine the spectral clusters. The resulting connected components estimate biological cell populations in the data sample.

Proper citation: SamSPECTRAL (RRID:SCR_001858) Copy   

•   Source: SciCrunch Registry

http://www.sdsc.edu/

Founded in 1985, the San Diego Supercomputer Center (SDSC) enables international science and engineering discoveries through advances in computational science and data-intensive, high-performance computing. SDSC is considered a leader in data-intensive computing, providing resources, services and expertise to the national research community including industry and academia. The mission of SDSC is to extend the reach of scientific accomplishments by providing tools such as high-performance hardware technologies, integrative software technologies, and deep interdisciplinary expertise to these communities. From 1997 to 2004, SDSC extended its leadership in computational science and engineering to form the National Partnership for Advanced Computational Infrastructure (NPACI), teaming with approximately 40 university partners around the country. Today, SDSC is an Organized Research Unit of the University of California, San Diego with a staff of talented scientists, software developers, and support personnel. A broad community of scientists, engineers, students, commercial partners, museums, and other facilities work with SDSC to develop cyberinfrastructure-enabled applications to help manage their extreme data needs. Projects run the gamut from creating astrophysics visualization for the American Museum of Natural History, to supporting more than 20,000 users per day to the Protein Data Bank, to performing large-scale, award-winning simulations of the origin of the universe or how a major earthquake would affect densely populated areas such as southern California. Along with these data cyberinfrastructure tools, SDSC also offers users full-time support including code optimization, training, 24-hour help desk services, portal development and a variety of other services. As one of the NSF's first national supercomputer centers, SDSC served as the data-intensive site lead in the agency's TeraGrid program, a multiyear effort to build and deploy the world's first large-scale infrastructure for open scientific research. SDSC currently provides advanced user support and expertise for XSEDE (Extreme Science and Engineering Discovery Environment) the five-year NSF-funded program that succeeded TeraGrid in mid-2011.

Proper citation: San Diego Supercomputer Center (RRID:SCR_001856) Copy   

•   Source: SciCrunch Registry

http://www.nsgc.org/

Professional society of genetic counselors that promotes networking, continuing education opportunities, advocacy, and discussion of relevant issues in the field of genetics.

Proper citation: National Society of Genetic Counselors (RRID:SCR_001803) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/RchyOptimyx.html

Software that constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).

Proper citation: RchyOptimyx (RRID:SCR_001889) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.13/bioc/html/cqn.html

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Proper citation: CQN (RRID:SCR_001786) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/src/contrib/Archive/PoissonSeq/

Software package that implements a method for normalization, testing, and false discovery rate estimation for RNA-sequencing data.

Proper citation: PoissonSeq (RRID:SCR_001784) Copy   

•   Source: SciCrunch Registry

http://www.kindai.ac.jp/english/

Private non-sectarian and coeducational university based in Higashiosaka, Osaka, Japan.

Proper citation: Kindai University; Osaka; Japan (RRID:SCR_001814) Copy   

•   Source: SciCrunch Registry

https://med.psu.edu/

Public, land-grant research university in Pennsylvania, USA. The College of Medicine offers professional degree programs in medicine.

Proper citation: Pennsylvania State Hershey College of Medicine; Pennsylvania; USA (RRID:SCR_002019) Copy   

•   Source: SciCrunch Registry