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http://stat.ethz.ch/R-manual/R-patched/library/stats/html/prcomp.html

R documentation for a function that performs a principal components analysis on a given data matrix and returns the results as an object of class prcomp.

Proper citation: Principal Components Analysis (RRID:SCR_014676) Copy   

•   Source: SciCrunch Registry
  

http://www.lji.org/faculty-research/scientific-cores/bioinformatics/#overview

Core Facility provides support for short or long-term projects requiring expertise the analysis of biological datasets. The services provided include the analysis of large-scale datasets (e.g. next-gen sequencing data, microarrays, etc.), the development of customized databases and reusable analysis pipelines, guidance on experimental design, support with technical sections of manuscripts and grants, and training on analysis software packages. All services are charged at our hourly rate.

Proper citation: La Jolla Institute for Immunology Bioinformatics Core Facility (RRID:SCR_014831) Copy   

•   Source: SciCrunch Registry
  

http://stat.ethz.ch/R-manual/R-devel/library/MASS/html/lda.html

R documentation for a function to perform linear discriminant analysis; specifically, to detect if the within-class covariance matrix is singular.

Proper citation: Linear Discriminant Analysis (RRID:SCR_014675) Copy   

•   Source: SciCrunch Registry
  

http://www.xperiment.mobi/

Mobile software application for behavioral social science experiments on an online platform. It can be used on computers, tablets, and smartphones. It is hardware independent, does not require online connectivity to perform a test, and has the option of interfacing with outside sensors, such as heart rate or weighting scales.

Proper citation: Xperiment (RRID:SCR_014712) Copy   

•   Source: SciCrunch Registry
  

http://www.awmf.org/en

An association of various medical entities in Germany. The organization advises on matters and tasks of fundamental and interdisciplinary interest in medicine, develops recommendations and resolutions and represents them at the institutions occupied with such tasks, such as research strategies, education, and postgraduate training.

Proper citation: Association of the Scientific Medical Societies in Germany (RRID:SCR_014716) Copy   

•   Source: SciCrunch Registry
  

https://imdevsoftware.wordpress.com/software/

A software suite for data wrangling, creating interactive data visualization, performing statistical analyses, cluster analyses, exploratory data analysis and visualization (such as principal component analysis), predictive modeling and biochemical pathway analysis.

Proper citation: DeviumWeb (RRID:SCR_014683) Copy   

•   Source: SciCrunch Registry
  

http://www.salk.edu/science/core-facilities/behavior-testing-core/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th,2024. Core facility that provides the resources to investigate sensory, motor and complex behavioral testing in rat and mouse models. The facility offers standard neurobehavioral tests, customized test batteries, training for independent use of the equipment, data interpretation and anlaysis.

Proper citation: Salk Institute Behavior Testing Core Facility (RRID:SCR_014840) Copy   

•   Source: SciCrunch Registry
  

https://imaps.genialis.com/iclip

Web server for analysis of high-resolution sequencing data. It can be used with all variants of CLIP,as well as with methods that interrogate RNA or DNA methylation, RNA processing, RNA structure or protein-DNA interactions.

Proper citation: iMaps (RRID:SCR_016705) Copy   

•   Source: SciCrunch Registry
  

http://www.speciation.net/Database/Instruments/Carl-Zeiss-AG/LIBRA-120-;i672

Electron microscope by Carl Zeiss AG which combines flexibility and ease of use of new control electronics, Windows® based user interface and a vacuum system.

Proper citation: Zeiss: libra 120 transmission electron microscope (RRID:SCR_016703) Copy   

•   Source: SciCrunch Registry
  

https://corefacilities.iss.it/dw/lib/exe/fetch.php?media=aree:citometria:strumentazione:gallios-brochure.pdf

Instrument provides acquisition of up to 12 parameters with optical design for enhanced sensitivity for multicolor assays. With customized forward scatter, to achieve accurate size measurement, and optimized electronics for high resolution and fast, accurate processing for researchers needs.

Proper citation: Gallios: Flow Cytometer (RRID:SCR_016702) Copy   

•   Source: SciCrunch Registry
  

https://github.com/fbreitwieser/pavian

Software R package for interactive analysis of metagenomics classification results with a special focus on infectious disease diagnosis. Used for analyzing and visualization of metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Provides an alignment viewer for validation of matches to a particular genome.

Proper citation: Pavian (RRID:SCR_016679) Copy   

•   Source: SciCrunch Registry
  

https://github.com/tomazc/iCount

Software Python package for protein-RNA interaction analysis. Used for analysis of protein-RNA interactions with iCLIP sequencing data and RNA maps.

Proper citation: iCount (RRID:SCR_016712) Copy   

•   Source: SciCrunch Registry
  

https://www.neuronexus.com/files/catalog/NeuroNexus-2023ProbeDesignCatalog.pdf

Instrument as a 16 channel linear electrode array from NeuroNexus Technologies, Ann Arbor, Michigan. Used to map brain function, detect neural activity, and stimulate or modulate neural circuits when brain function is impaired. Used for small and large animal models for neuroscience and clinical applications.

Proper citation: Neuronexus: Neural Probe A1x16-3mm-100-703 (RRID:SCR_016678) Copy   

•   Source: SciCrunch Registry
  

https://github.com/CSB5/INC-Seq

Software for accurate single molecule reads using nanopore sequencing. Used for 16S rRNA-based profiling to investigate complex bacterial communities.

Proper citation: INC-Seq (RRID:SCR_016711) Copy   

•   Source: SciCrunch Registry
  

https://www.a-msystems.com/p-285-model-2100-isolated-pulse-stimulator.aspx

Instrument used for a variety of physiological stimulation protocols, including behavioral feedback, LTP/LTD, lesion making, electrode marking, ultrafast timing applications, orthodromic/antidromic stimulation, and kindling. Used in a neurophysiological and physiological experiment protocols.

Proper citation: A-M SYSTEMS: Model 2100 Isolated Pulse Stimulator (RRID:SCR_016677) Copy   

•   Source: SciCrunch Registry
  

https://github.com/umerijaz/nanopore

Software for a workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform. Used for full-length SSU rRNA gene sequencing.

Proper citation: NanoAmpli-Seq (RRID:SCR_016710) Copy   

•   Source: SciCrunch Registry
  

http://jefferis.github.io/nat/

Software R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons in the context of 3D brain structures.

Proper citation: NeuroAnatomy Toolbox (RRID:SCR_016716) Copy   

•   Source: SciCrunch Registry
  

http://biophysics.fsu.edu/facilities/physical-biochemistry-facility/

Facility for biophysical studies of macromolecules with emphasis on providing resources, instrumentation, training, and guidance to graduate and undergraduate students.

Proper citation: Florida State University Physical Biochemistry Core Facility (RRID:SCR_016714) Copy   

•   Source: SciCrunch Registry
  

https://www.colinst.com/oxymax-clams

Instrumentation for monitoring behavior and physiology in lab animals by Columbus Instruments. Used for simultaneous multi parameter assessment of 1 to 32 test animals with automated operation for experiments lasting up to three days.

Proper citation: Columbus Instruments: Oxymax-CLAMS (RRID:SCR_016718) Copy   

•   Source: SciCrunch Registry
  

https://molecular.pathology.ufl.edu/

Histology and light microscopy facility for paraffin and frozen blocks and all aspects of sample preparation, fixation, embedding, sectioning, staining, and imaging. Consultations, technical assistance and training are also provided. Standard operating procedures compliant with good laboratory and clinical processes are followed for all procedures. Services include cryosectioning, whole slide imaging, hematoxylin and eosin staining, immunfluorescence, and tissue microarrays..

Proper citation: University of FLorida College of Medicine Molecular Pathology Core Facility (RRID:SCR_016601) Copy   

•   Source: SciCrunch Registry